# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbiB 354 6.05e-18 1gotB 340 8.81e-18 b.69.4.1 27648 2h14A 317 9.91e-18 3emhA 318 1.08e-17 2bcjB 340 1.44e-17 b.69.4.1 128289 1a0rB 340 1.52e-17 b.69.4.1 27658 2gnqA 336 1.60e-17 1gxrA 337 3.46e-17 b.69.4.1 70722 2qc5A 300 6.70e-17 1nr0A 611 1.07e-16 b.69.4.1,b.69.4.1 86078,86079 2z2nA 299 1.48e-16 1r5mA 425 1.61e-16 3fm0A 345 1.80e-16 3frxA 319 2.33e-16 3fvzA 329 3.62e-16 1rwiA 270 5.14e-16 b.68.9.1 97987 1k8kC 372 5.25e-16 b.69.4.1 68308 3acpA 417 7.29e-16 3ei4B 436 9.32e-16 2qxvA 361 1.22e-15 3dxkC 372 1.48e-15 1pguA 615 1.93e-15 b.69.4.1,b.69.4.1 88069,88070 1ri6A 343 2.26e-15 b.69.11.1 97503 2aq5A 402 2.47e-15 3hrpA 409 2.93e-15 3dwlC 377 3.40e-15 1l0qA 391 3.90e-15 b.1.3.1,b.69.2.3 77644,77645 1nexB 464 4.24e-15 a.158.1.1,b.69.4.1 80443,80444 3ei3B 383 4.65e-15 2dg1A 333 5.15e-15 b.68.6.1 131493 3dw8B 447 5.27e-15 3k26A 366 5.63e-15 2oajA 902 5.75e-15 3i2nA 357 5.81e-15 1q7fA 286 6.35e-15 b.68.9.1 96036 3greA 437 7.46e-15 2pm7B 297 9.32e-15 3hfqA 347 9.46e-15 2ovrB 445 1.06e-14 a.158.1.1,b.69.4.1 145735,145736 3bwsA 433 1.18e-14 1yfqA 342 1.28e-14 b.69.4.2 116680 3c99A 432 1.49e-14 3iiwA 365 1.68e-14 1kb0A 677 1.80e-14 a.3.1.6,b.70.1.1 68378,68379 3dsmA 328 2.09e-14 2p4oA 306 2.46e-14 b.68.6.3 149216 2hesX 330 2.54e-14 3cfsB 414 2.93e-14 2oizA 361 3.35e-14 1p22A 435 3.46e-14 a.158.1.1,b.69.4.1 87715,87716 3li3A 314 3.82e-14 3hxjA 330 4.20e-14 2qe8A 343 4.21e-14 2gc7A 386 4.93e-14 b.69.2.1 134954 3li5A 314 5.20e-14 3c75H 426 6.63e-14 1pbyB 337 6.71e-14 b.69.2.2 94422 3gfcA 425 6.74e-14 1pjxA 314 7.33e-14 b.68.6.1 104167 2ad6A 571 7.91e-14 b.70.1.1 126568 1jmxB 349 1.05e-13 b.69.2.2 66906 2vduB 450 1.08e-13 3e5zA 296 1.09e-13 2agyA 361 1.13e-13 3f3fA 351 1.35e-13 2oitA 434 1.38e-13 3li4A 314 1.57e-13 2ojhA 297 1.63e-13 3i1cA 324 1.86e-13 1s4uX 407 2.02e-13 b.69.4.1 112027 2ghsA 326 2.23e-13 b.68.6.1 135209 2hqsA 415 2.60e-13 b.68.4.1,c.51.2.1 136662,136663 2iaaA 390 3.25e-13 1sq9A 397 3.35e-13 b.69.4.1 105889 1yiqA 689 4.38e-13 2fp8A 322 5.18e-13 2j04B 524 5.80e-13 1w6sA 599 6.23e-13 b.70.1.1 114284 3dr2A 305 6.66e-13 3fgbA 361 6.79e-13 1kv9A 668 7.54e-13 a.3.1.6,b.70.1.1 73056,73057 2w18A 356 9.02e-13 3kyaA 496 9.84e-13 1k32A 1045 1.49e-12 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2d5lA 706 2.21e-12 1jofA 365 3.31e-12 b.69.10.1 71775 3c5mA 396 5.34e-12 1xipA 388 5.71e-12 b.69.14.1 115360 3ei3A 1158 6.80e-12 2be1A 339 1.09e-11 1npeA 267 1.14e-11 b.68.5.1 92032 3g4eA 297 1.16e-11 1v04A 355 1.23e-11 b.68.6.2 100240 3e0cA 1140 1.41e-11 2hu5A 582 1.93e-11 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 2.74e-11 b.70.3.1,c.69.1.24 87354,87355 1cruA 454 8.50e-11 b.68.2.1 27617 2gopA 347 1.32e-10 2z3zA 706 1.43e-10 2wftA 458 1.52e-10 3hacA 728 1.71e-10 1yr2A 741 2.11e-10 1h2wA 710 2.39e-10 b.69.7.1,c.69.1.4 76596,76597 3llpA 493 3.27e-10 2qr5A 582 9.24e-10 b.69.7.2,c.69.1.33 151278,151279 1k3iA 656 1.05e-09 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3g0bA 740 1.21e-09 2bklA 695 3.89e-09 1o6gA 710 8.22e-09 b.69.7.1,c.69.1.4 81087,81088 3dasA 347 1.06e-08 2ismA 352 5.02e-07 2g8sA 353 8.21e-07 2iwaA 266 1.58e-06 2p9wA 334 1.95e-06 1zgkA 308 4.52e-06 b.68.11.1 145998 2vpjA 301 5.18e-06 3elqA 571 5.57e-06 2wg4B 457 7.07e-06 2wg3C 463 1.18e-05 2fluX 308 1.29e-05 b.68.11.1 133750 3ii7A 306 1.58e-05 1x2jA 316 1.82e-05 b.68.11.1 121643 2uvkA 357 4.29e-05 2wozA 318 4.86e-05 3hx6A 570 0.000191 1mdaH 368 0.000370 b.69.2.1 27637 2eceA 462 0.000392 2zwaA 695 0.000440 1h6lA 353 0.000490 b.68.3.1 60687 3hxrA 761 0.002494 2zuxA 591 0.003668 3l2oB 312 0.007079 3gc3B 363 0.008103 3h6jA 438 0.01155 2ebsA 789 0.01345 b.69.13.1,b.69.13.1 146772,146773 2zuyA 620 0.01748 3b7fA 394 0.02195 1sqjA 789 0.02618 b.69.13.1,b.69.13.1 105918,105919 2v05A 311 0.02859 3h7nA 729 0.07146 3kciA 389 0.08737 2b5nA 323 0.08849 3f6kA 685 0.09335 2jkbA 686 0.1184 1utcA 363 0.1207 a.118.1.4,b.69.6.1 99914,99915 2sliA 679 0.1683 b.29.1.9,b.68.1.1 24274,27611 2w20A 471 0.1760 2w5nA 367 0.1872 2bibA 547 0.1927 b.109.1.1,d.157.1.8 128581,128582 1zi0A 307 0.2659 2jd4A 383 0.2680 2iwkA 642 0.3316 1ofzA 312 0.3891 b.68.8.1 86978 2cn3A 737 0.4669 1fwxA 595 0.4738 b.6.1.4,b.69.3.1 60069,60070 3f7fA 729 0.5532 1suuA 312 0.5582 b.68.10.1 99006 1q47A 495 0.5807 b.69.12.1 104532 1shyB 551 0.6646 b.69.12.1,g.16.2.1 105565,105566 2ww5A 468 0.8321 2vw2A 697 0.9019 3silA 379 1.300 b.68.1.1 27542 1wp5A 323 1.829 b.68.10.1 114780 3kptA 355 2.024 3kvcA 533 2.116 1pz7A 204 2.180 b.29.1.4 95405 3cu9A 314 2.448 1so7A 382 2.461 b.68.1.1 112106 1wl7A 312 2.521 b.67.2.1 120996 3d61A 314 2.994 3fsnA 533 3.381 2ww8A 893 3.447 3l6vA 370 3.727 2j04A 588 4.496 2f6eA 127 4.514 1h09A 338 4.735 b.109.1.1,c.1.8.8 83420,83421 2w38A 438 4.884 1jtdB 273 5.537 b.69.5.2 67265 3c3vA 510 5.628 3kstA 306 5.794 2uzxB 727 5.810 1yrzA 528 5.989 b.29.1.23,b.67.2.1 123948,123949 2wl1A 191 6.322 3cjyA 259 6.650 1olzA 663 7.325 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2hboA 158 7.607 d.38.1.5 136319 3d60A 314 8.310 2ac1A 541 8.458 1w8oA 601 9.876 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2o62A 270 10.39 b.60.1.9,b.60.1.9 148622,148623 3d5yA 314 10.63 1qu0A 191 10.74 b.29.1.4 24225 3c12A 138 11.17 1gyhA 318 11.49 b.67.2.1 70757 2j8gA 339 12.08 b.109.1.1,c.1.8.8 147915,147916 3k2iA 422 12.27 3lv4A 456 12.27 3c9zA 258 12.29 1xd5A 112 12.30 b.78.1.1 115155 1h30A 422 12.42 b.29.1.4,b.29.1.4 76604,76605 1zvtA 256 12.64 1iwlA 182 13.10 b.125.1.1 83757 3hlkA 446 13.23 2bf6A 449 13.34 3flpA 217 14.50 3kb5A 193 14.80 2z8rA 591 15.96 3fz3A 531 16.05 1c3mA 147 16.08 b.77.3.1 27983 2ej8A 160 16.77 2pz4A 239 16.98 2iwgB 181 18.44 b.29.1.22 145548 2wjsA 608 18.72 3c2uA 538 18.74 3bk5A 237 19.78 3a0eA 110 19.80 2r16A 182 20.92 2cohA 202 22.41 a.4.5.4,b.82.3.2 130677,130678 2zcwA 202 23.99 2aukA 190 24.32 2b20A 403 24.96 b.1.18.20,c.69.1.2 127685,127686 1uv4A 293 25.33 b.67.2.1 119705 2e11A 266 26.25 1at0A 145 26.37 b.86.1.1 28374 2gu1A 361 27.90 1vkdA 338 28.51 b.67.2.4 108644 1w0pA 781 28.54 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1qxmA 300 29.46 b.42.2.1,b.42.2.1 96533,96534 2h0bA 184 29.85 2hyxA 352 30.19 2ayhA 214 30.97 b.29.1.2 24172 1jpcA 109 32.44 b.78.1.1 27986 1a9xB 379 32.66 c.8.3.1,c.23.16.1 30732,31409 3kcmA 154 34.57 2i7fA 108 34.94 3hkxA 283 35.01 1gqzA 274 35.76 d.21.1.1,d.21.1.1 83311,83312 3d3iA 761 36.13 2w1vA 276 36.72 2hfsA 332 36.72 1vqoA 240 37.04 b.34.5.3,b.40.4.5 120361,120362 3db5A 151 37.58 2burA 209 38.90 b.3.6.1 129227 3cpnA 330 39.90 3bodA 178 40.02 1kj1D 109 42.68 b.78.1.1 68639 2jxwA 75 42.84 1s1dA 331 42.91 b.67.3.1 98344 3flcO 518 44.18 1xksA 450 44.37 b.69.14.1 115422 1f89A 291 45.40 d.160.1.1 64988 3d7eO 505 45.62 3hmyA 450 47.78 3hd8A 389 48.67 3gf8A 296 50.50 3ld7A 101 50.78 2f0xA 148 51.01 d.38.1.5 132673 3ewkA 227 51.49 3c7fA 487 52.26 3fijA 254 53.01 2d5fA 493 53.28 2gf3A 389 53.31 c.3.1.2,d.16.1.3 135070,135071 3ilfA 268 54.53 2vouA 397 54.69 c.3.1.2,d.16.1.2 153389,153390 3fzyA 234 55.85 2cl2A 298 56.13 1wuuA 399 56.15 d.14.1.5,d.58.26.7 114900,114901 2w40A 503 57.15 1ntvA 152 57.57 b.55.1.2 86168 1jcfA 344 57.70 c.55.1.1,c.55.1.1 62878,62879 3l5eA 414 58.08 1k9vF 201 58.35 c.23.16.1 68365 2zylA 386 58.90 3ah2A 288 59.59 1nnxA 109 60.02 b.40.10.1 92013 2pimA 141 60.47 2zpdA 190 60.78 3ibzA 191 60.96 1s7jA 262 61.10 d.21.1.2 98647 2gkeA 274 61.42 d.21.1.1,d.21.1.1 135329,135330 1f5mA 180 62.05 d.110.2.1 40895 2cy9A 140 62.31 d.38.1.5 131019 1zkiA 133 62.67 d.38.1.5 125199 3ge2A 130 63.46 2o34A 250 63.49 d.96.2.2 148565 3gbtA 504 66.46 1j58A 385 66.71 b.82.1.2 71531 2biwA 490 66.89 3dzwA 109 66.90 2q2iA 116 67.84 3ef2A 293 67.91 1ksiA 642 68.31 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 3gkeA 349 68.62 3a1jC 263 68.67 2q3wA 111 70.94 b.33.1.1 139813 2e9qA 459 71.09 2uxtA 451 71.33 1wlgA 299 71.45 b.152.1.1 114726 3l0qA 554 72.17 1z02A 446 72.23 3h46O 506 72.27 1yllA 200 72.38 b.82.1.17 123653 1juhA 350 72.52 b.82.1.5 71884 2jmzA 186 72.90 1y7mA 164 74.47 b.160.1.1,d.7.1.1 122696,122697 3ihxA 152 74.72 2kppA 114 75.00 2d4wA 504 75.83 2h4uA 145 77.88 d.38.1.5 136082 2gbwA 454 77.99 2k7pA 188 78.05 1knmA 130 78.51 b.42.2.1 72781 1jfuA 186 78.60 c.47.1.10 62940 3lhnA 126 80.00 2nzhA 113 81.37 2ea7A 434 82.66 3h3nO 506 83.34 3ll3A 504 83.99 2fy6A 143 84.02 c.47.1.10 134344 1xzoA 174 84.60 c.47.1.10 122474 2ihoA 293 85.15 b.42.2.1,d.3.1.18 147681,147682 2dpfA 115 85.70 3ezwA 526 87.54 2yzhA 171 87.78