# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbiB 354 4.60e-18 1gotB 340 6.97e-18 b.69.4.1 27648 2h14A 317 7.58e-18 3emhA 318 8.05e-18 2bcjB 340 1.08e-17 b.69.4.1 128289 1a0rB 340 1.18e-17 b.69.4.1 27658 2gnqA 336 1.22e-17 1gxrA 337 2.45e-17 b.69.4.1 70722 2qc5A 300 5.69e-17 1nr0A 611 8.62e-17 b.69.4.1,b.69.4.1 86078,86079 2z2nA 299 1.25e-16 3fm0A 345 1.42e-16 1r5mA 425 1.70e-16 3frxA 319 1.87e-16 3fvzA 329 2.89e-16 1rwiA 270 3.52e-16 b.68.9.1 97987 1k8kC 372 3.88e-16 b.69.4.1 68308 3acpA 417 5.91e-16 3ei4B 436 8.06e-16 2qxvA 361 1.13e-15 3dxkC 372 1.13e-15 1pguA 615 1.47e-15 b.69.4.1,b.69.4.1 88069,88070 1ri6A 343 1.77e-15 b.69.11.1 97503 2aq5A 402 2.28e-15 3dwlC 377 2.48e-15 3hrpA 409 2.52e-15 1l0qA 391 2.56e-15 b.1.3.1,b.69.2.3 77644,77645 3ei3B 383 3.73e-15 2dg1A 333 3.77e-15 b.68.6.1 131493 1nexB 464 3.92e-15 a.158.1.1,b.69.4.1 80443,80444 3dw8B 447 4.58e-15 2oajA 902 4.61e-15 3i2nA 357 4.93e-15 3k26A 366 5.00e-15 1q7fA 286 5.39e-15 b.68.9.1 96036 3greA 437 6.06e-15 3hfqA 347 6.96e-15 2pm7B 297 7.64e-15 3bwsA 433 9.41e-15 2ovrB 445 9.94e-15 a.158.1.1,b.69.4.1 145735,145736 1yfqA 342 1.18e-14 b.69.4.2 116680 3c99A 432 1.36e-14 3iiwA 365 1.41e-14 1kb0A 677 1.60e-14 a.3.1.6,b.70.1.1 68378,68379 3dsmA 328 1.68e-14 2hesX 330 2.03e-14 2p4oA 306 2.20e-14 b.68.6.3 149216 3cfsB 414 2.60e-14 2oizA 361 2.69e-14 2qe8A 343 2.88e-14 1p22A 435 2.95e-14 a.158.1.1,b.69.4.1 87715,87716 3li3A 314 3.02e-14 3hxjA 330 3.43e-14 2gc7A 386 3.97e-14 b.69.2.1 134954 3li5A 314 4.18e-14 3c75H 426 5.45e-14 1pbyB 337 5.51e-14 b.69.2.2 94422 3gfcA 425 5.81e-14 1pjxA 314 5.91e-14 b.68.6.1 104167 2ad6A 571 7.53e-14 b.70.1.1 126568 1jmxB 349 7.56e-14 b.69.2.2 66906 3e5zA 296 8.86e-14 2vduB 450 9.11e-14 2agyA 361 9.71e-14 2oitA 434 1.07e-13 2ojhA 297 1.24e-13 3f3fA 351 1.24e-13 3li4A 314 1.30e-13 3i1cA 324 1.35e-13 1s4uX 407 1.50e-13 b.69.4.1 112027 2ghsA 326 1.67e-13 b.68.6.1 135209 2hqsA 415 1.91e-13 b.68.4.1,c.51.2.1 136662,136663 2iaaA 390 2.39e-13 1sq9A 397 2.59e-13 b.69.4.1 105889 1yiqA 689 3.76e-13 2fp8A 322 3.82e-13 3dr2A 305 4.85e-13 3fgbA 361 4.98e-13 1w6sA 599 5.66e-13 b.70.1.1 114284 2j04B 524 5.73e-13 1kv9A 668 7.05e-13 a.3.1.6,b.70.1.1 73056,73057 3kyaA 496 7.15e-13 2w18A 356 7.86e-13 1k32A 1045 1.27e-12 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2d5lA 706 1.67e-12 1jofA 365 2.73e-12 b.69.10.1 71775 1xipA 388 3.98e-12 b.69.14.1 115360 3c5mA 396 4.15e-12 3ei3A 1158 6.09e-12 1npeA 267 7.98e-12 b.68.5.1 92032 2be1A 339 9.31e-12 1v04A 355 9.44e-12 b.68.6.2 100240 3g4eA 297 9.54e-12 3e0cA 1140 1.15e-11 2hu5A 582 1.83e-11 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 2.37e-11 b.70.3.1,c.69.1.24 87354,87355 1cruA 454 5.75e-11 b.68.2.1 27617 2wftA 458 9.81e-11 2gopA 347 1.08e-10 2z3zA 706 1.27e-10 3hacA 728 1.40e-10 1yr2A 741 1.75e-10 1h2wA 710 2.14e-10 b.69.7.1,c.69.1.4 76596,76597 3llpA 493 2.29e-10 1k3iA 656 8.57e-10 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qr5A 582 8.67e-10 b.69.7.2,c.69.1.33 151278,151279 3g0bA 740 1.07e-09 2bklA 695 3.13e-09 1o6gA 710 7.11e-09 b.69.7.1,c.69.1.4 81087,81088 3dasA 347 7.78e-09 2ismA 352 3.23e-07 2g8sA 353 5.94e-07 2iwaA 266 1.42e-06 2p9wA 334 1.86e-06 1zgkA 308 3.31e-06 b.68.11.1 145998 2vpjA 301 4.58e-06 3elqA 571 4.90e-06 2wg4B 457 6.23e-06 2fluX 308 1.07e-05 b.68.11.1 133750 2wg3C 463 1.10e-05 3ii7A 306 1.23e-05 1x2jA 316 1.44e-05 b.68.11.1 121643 2uvkA 357 3.86e-05 2wozA 318 3.90e-05 3hx6A 570 0.000171 1mdaH 368 0.000281 b.69.2.1 27637 2zwaA 695 0.000340 2eceA 462 0.000399 1h6lA 353 0.000460 b.68.3.1 60687 3hxrA 761 0.002279 2zuxA 591 0.003495 3l2oB 312 0.006102 3gc3B 363 0.008159 3h6jA 438 0.008864 2ebsA 789 0.01050 b.69.13.1,b.69.13.1 146772,146773 2zuyA 620 0.01451 1sqjA 789 0.02230 b.69.13.1,b.69.13.1 105918,105919 3b7fA 394 0.02422 2v05A 311 0.02785 3h7nA 729 0.06831 3f6kA 685 0.07083 2b5nA 323 0.08099 3kciA 389 0.08530 1utcA 363 0.1098 a.118.1.4,b.69.6.1 99914,99915 2jkbA 686 0.1271 2w20A 471 0.1507 2bibA 547 0.1518 b.109.1.1,d.157.1.8 128581,128582 2w5nA 367 0.1628 2sliA 679 0.1781 b.29.1.9,b.68.1.1 24274,27611 1zi0A 307 0.2596 2jd4A 383 0.2916 1ofzA 312 0.3031 b.68.8.1 86978 2iwkA 642 0.3360 2cn3A 737 0.3742 1fwxA 595 0.4823 b.6.1.4,b.69.3.1 60069,60070 1shyB 551 0.5686 b.69.12.1,g.16.2.1 105565,105566 1q47A 495 0.6383 b.69.12.1 104532 3f7fA 729 0.6754 1suuA 312 0.6970 b.68.10.1 99006 2ww5A 468 0.8265 2vw2A 697 0.9361 3silA 379 1.153 b.68.1.1 27542 1wp5A 323 1.507 b.68.10.1 114780 1wl7A 312 1.756 b.67.2.1 120996 3cu9A 314 2.001 3kvcA 533 2.039 1pz7A 204 2.141 b.29.1.4 95405 3kptA 355 2.210 1so7A 382 2.265 b.68.1.1 112106 3d61A 314 2.580 3l6vA 370 3.151 1jtdB 273 3.495 b.69.5.2 67265 3fsnA 533 3.583 2w38A 438 4.155 2f6eA 127 4.331 2ww8A 893 4.363 3c3vA 510 4.624 2uzxB 727 4.715 1h09A 338 4.724 b.109.1.1,c.1.8.8 83420,83421 2j04A 588 4.805 1yrzA 528 4.931 b.29.1.23,b.67.2.1 123948,123949 3kstA 306 5.407 2wl1A 191 6.209 3d60A 314 6.214 1olzA 663 6.363 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1w8oA 601 7.561 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2hboA 158 7.727 d.38.1.5 136319 3d5yA 314 8.191 3lv4A 456 8.646 2ac1A 541 8.676 1gyhA 318 8.820 b.67.2.1 70757 1qu0A 191 9.414 b.29.1.4 24225 3c12A 138 9.96 3cjyA 259 10.76 2o62A 270 11.69 b.60.1.9,b.60.1.9 148622,148623 3c9zA 258 12.16 1iwlA 182 12.41 b.125.1.1 83757 2z8rA 591 12.66 3c2uA 538 13.12 1xd5A 112 13.49 b.78.1.1 115155 2bf6A 449 13.62 3k2iA 422 13.71 1zvtA 256 14.08 3hlkA 446 14.25 1h30A 422 14.43 b.29.1.4,b.29.1.4 76604,76605 3fz3A 531 14.44 2j8gA 339 14.44 b.109.1.1,c.1.8.8 147915,147916 3flpA 217 14.45 2ej8A 160 15.37 2wjsA 608 17.40 3kb5A 193 17.64 2pz4A 239 17.78 2r16A 182 19.92 1c3mA 147 21.47 b.77.3.1 27983 3a0eA 110 21.80 3bk5A 237 21.93 2iwgB 181 22.39 b.29.1.22 145548 1uv4A 293 22.45 b.67.2.1 119705 2aukA 190 22.60 1vkdA 338 22.84 b.67.2.4 108644 2b20A 403 23.63 b.1.18.20,c.69.1.2 127685,127686 2cohA 202 23.66 a.4.5.4,b.82.3.2 130677,130678 2e11A 266 25.78 2zcwA 202 25.80 1at0A 145 25.92 b.86.1.1 28374 1qxmA 300 26.43 b.42.2.1,b.42.2.1 96533,96534 2hyxA 352 29.49 2h0bA 184 30.06 2gu1A 361 30.07 2gf3A 389 30.53 c.3.1.2,d.16.1.3 135070,135071 1w0pA 781 31.51 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1gqzA 274 32.33 d.21.1.1,d.21.1.1 83311,83312 3kcmA 154 32.75 2ayhA 214 33.57 b.29.1.2 24172 2hfsA 332 33.87 3cpnA 330 34.75 1jpcA 109 35.07 b.78.1.1 27986 2burA 209 35.24 b.3.6.1 129227 3bodA 178 36.48 2i7fA 108 36.54 1kj1D 109 36.62 b.78.1.1 68639 3c7fA 487 37.79 3d3iA 761 38.69 3db5A 151 38.79 3hkxA 283 39.24 2w1vA 276 39.68 1vqoA 240 41.95 b.34.5.3,b.40.4.5 120361,120362 2jxwA 75 42.01 1s1dA 331 43.40 b.67.3.1 98344 1a9xB 379 43.83 c.8.3.1,c.23.16.1 30732,31409 2d5fA 493 44.09 3hd8A 389 45.43 2vouA 397 46.48 c.3.1.2,d.16.1.2 153389,153390 3ewkA 227 47.43 1xksA 450 47.55 b.69.14.1 115422 3flcO 518 47.98 3d7eO 505 48.74 3fijA 254 52.79 1ntvA 152 53.77 b.55.1.2 86168 3ld7A 101 53.82 1f89A 291 54.68 d.160.1.1 64988 3fzyA 234 55.59 3ge2A 130 56.72 1nnxA 109 56.78 b.40.10.1 92013 3ah2A 288 57.23 2q2iA 116 57.30 2w40A 503 58.47 2gkeA 274 58.48 d.21.1.1,d.21.1.1 135329,135330 3ilfA 268 58.82 2bgzA 299 59.55 1s7jA 262 59.69 d.21.1.2 98647 1k9vF 201 59.75 c.23.16.1 68365 3l5eA 414 60.86 1wuuA 399 60.90 d.14.1.5,d.58.26.7 114900,114901 2o34A 250 61.22 d.96.2.2 148565 1wlgA 299 61.31 b.152.1.1 114726 2zpdA 190 61.37 2biwA 490 61.69 2e9qA 459 62.06 2q3wA 111 62.49 b.33.1.1 139813 1f5mA 180 62.61 d.110.2.1 40895 3ef2A 293 63.36 2nzhA 113 64.69 2zylA 386 64.71 2f0xA 148 65.44 d.38.1.5 132673 1jcfA 344 65.53 c.55.1.1,c.55.1.1 62878,62879 1yllA 200 65.59 b.82.1.17 123653 1jfuA 186 67.18 c.47.1.10 62940 1j58A 385 68.23 b.82.1.2 71531 3lhnA 126 68.50 2cl2A 298 68.69 3gkeA 349 68.81 3gbtA 504 70.26 3ihxA 152 71.02 2kppA 114 71.30 3hmyA 450 71.53 1knmA 130 71.58 b.42.2.1 72781 3gf8A 296 72.31 1juhA 350 72.68 b.82.1.5 71884 3h46O 506 72.70 2jmzA 186 72.79 3a1jC 263 72.90 2pimA 141 73.53 2fy6A 143 73.67 c.47.1.10 134344 1z02A 446 73.99 1zkiA 133 74.26 d.38.1.5 125199 3ibzA 191 75.04 3g48A 112 75.24 3dzwA 109 75.80 2f9sA 151 75.95 c.47.1.10 133168 1y7mA 164 75.99 b.160.1.1,d.7.1.1 122696,122697 1ksiA 642 76.75 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2d4wA 504 77.39 2cy9A 140 78.25 d.38.1.5 131019 3l0qA 554 78.29 1xzoA 174 79.81 c.47.1.10 122474 2ea7A 434 79.87 2q2hA 131 80.24 2yzhA 171 80.61 3hz6A 511 81.79 3h3nO 506 81.88 1w18A 493 82.36 2ihoA 293 83.05 b.42.2.1,d.3.1.18 147681,147682 1y7bA 542 86.05 b.29.1.23,b.67.2.1 122687,122688 3ll3A 504 87.72 2gbwA 454 88.04 1ybiA 288 89.11 1p4kA 295 89.67 d.153.1.5 87772 3fx3A 237 89.87