# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bcjB 340 4.43e-23 b.69.4.1 128289 2pbiB 354 4.53e-23 1gotB 340 5.39e-23 b.69.4.1 27648 2h14A 317 6.62e-23 3emhA 318 9.36e-23 1a0rB 340 1.16e-22 b.69.4.1 27658 2gnqA 336 1.20e-22 1gxrA 337 1.01e-21 b.69.4.1 70722 1nr0A 611 1.69e-21 b.69.4.1,b.69.4.1 86078,86079 3frxA 319 2.11e-21 1r5mA 425 2.17e-21 2qc5A 300 2.44e-21 2z2nA 299 2.64e-21 3fm0A 345 3.68e-21 1k8kC 372 1.83e-20 b.69.4.1 68308 3ei4B 436 2.19e-20 3fvzA 329 3.01e-20 1l0qA 391 4.19e-20 b.1.3.1,b.69.2.3 77644,77645 1rwiA 270 4.59e-20 b.68.9.1 97987 3acpA 417 6.58e-20 1pguA 615 6.64e-20 b.69.4.1,b.69.4.1 88069,88070 3dxkC 372 6.95e-20 1ri6A 343 9.86e-20 b.69.11.1 97503 2qxvA 361 1.32e-19 3ei3B 383 1.46e-19 3dwlC 377 1.55e-19 1q7fA 286 1.63e-19 b.68.9.1 96036 1nexB 464 2.04e-19 a.158.1.1,b.69.4.1 80443,80444 3hfqA 347 3.44e-19 3i2nA 357 3.49e-19 3k26A 366 3.64e-19 3bwsA 433 3.81e-19 2aq5A 402 4.18e-19 2ovrB 445 4.19e-19 a.158.1.1,b.69.4.1 145735,145736 2dg1A 333 4.68e-19 b.68.6.1 131493 2hesX 330 7.85e-19 3cfsB 414 9.12e-19 3iiwA 365 9.66e-19 3c99A 432 9.79e-19 3hrpA 409 1.04e-18 3greA 437 1.14e-18 1p22A 435 1.24e-18 a.158.1.1,b.69.4.1 87715,87716 2p4oA 306 1.36e-18 b.68.6.3 149216 2pm7B 297 1.52e-18 3dw8B 447 1.89e-18 2oajA 902 2.30e-18 1pbyB 337 2.52e-18 b.69.2.2 94422 1yfqA 342 2.68e-18 b.69.4.2 116680 3dsmA 328 3.04e-18 3gfcA 425 3.04e-18 3hxjA 330 3.60e-18 2gc7A 386 5.41e-18 b.69.2.1 134954 2qe8A 343 7.75e-18 3li3A 314 8.16e-18 1pjxA 314 8.21e-18 b.68.6.1 104167 2oizA 361 8.79e-18 1kb0A 677 9.76e-18 a.3.1.6,b.70.1.1 68378,68379 3c75H 426 1.23e-17 3li5A 314 1.29e-17 3e5zA 296 1.38e-17 1jmxB 349 1.49e-17 b.69.2.2 66906 3i1cA 324 1.64e-17 2ghsA 326 1.82e-17 b.68.6.1 135209 1s4uX 407 1.95e-17 b.69.4.1 112027 1sq9A 397 2.38e-17 b.69.4.1 105889 3f3fA 351 3.05e-17 3li4A 314 3.23e-17 2vduB 450 3.33e-17 2oitA 434 4.53e-17 3fgbA 361 5.48e-17 2agyA 361 1.10e-16 3dr2A 305 1.29e-16 2ad6A 571 1.67e-16 b.70.1.1 126568 2ojhA 297 1.77e-16 2hqsA 415 1.97e-16 b.68.4.1,c.51.2.1 136662,136663 2iaaA 390 2.09e-16 2w18A 356 3.68e-16 2j04B 524 3.94e-16 2fp8A 322 4.13e-16 1k32A 1045 4.89e-16 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1jofA 365 5.10e-16 b.69.10.1 71775 1w6sA 599 5.94e-16 b.70.1.1 114284 1yiqA 689 7.45e-16 3c5mA 396 1.91e-15 3kyaA 496 2.09e-15 1kv9A 668 2.14e-15 a.3.1.6,b.70.1.1 73056,73057 3g4eA 297 4.55e-15 3ei3A 1158 5.22e-15 1xipA 388 5.65e-15 b.69.14.1 115360 2d5lA 706 6.41e-15 1v04A 355 6.68e-15 b.68.6.2 100240 1npeA 267 9.32e-15 b.68.5.1 92032 3e0cA 1140 1.19e-14 2hu5A 582 2.00e-14 b.69.7.2,c.69.1.33 136763,136764 2be1A 339 2.73e-14 1orvA 728 1.12e-13 b.70.3.1,c.69.1.24 87354,87355 2gopA 347 1.26e-13 1cruA 454 1.90e-13 b.68.2.1 27617 3hacA 728 8.13e-13 1yr2A 741 8.86e-13 1h2wA 710 1.28e-12 b.69.7.1,c.69.1.4 76596,76597 2wftA 458 1.51e-12 1k3iA 656 1.87e-12 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2z3zA 706 2.07e-12 2qr5A 582 4.03e-12 b.69.7.2,c.69.1.33 151278,151279 3g0bA 740 9.35e-12 3dasA 347 1.28e-11 3llpA 493 1.84e-11 2bklA 695 3.45e-11 1o6gA 710 5.88e-11 b.69.7.1,c.69.1.4 81087,81088 2iwaA 266 1.14e-09 2ismA 352 1.51e-09 2p9wA 334 4.14e-09 2g8sA 353 1.12e-08 1zgkA 308 3.32e-08 b.68.11.1 145998 2vpjA 301 3.59e-08 2wg4B 457 6.13e-08 3ii7A 306 1.03e-07 3elqA 571 1.16e-07 2fluX 308 1.56e-07 b.68.11.1 133750 1x2jA 316 2.03e-07 b.68.11.1 121643 2wozA 318 5.35e-07 2uvkA 357 1.15e-06 2wg3C 463 1.19e-06 1mdaH 368 1.65e-06 b.69.2.1 27637 2eceA 462 2.45e-06 3hx6A 570 3.22e-06 2zwaA 695 3.63e-06 1h6lA 353 5.58e-06 b.68.3.1 60687 2zuxA 591 7.72e-05 3gc3B 363 0.000119 3hxrA 761 0.000144 2zuyA 620 0.000225 3h6jA 438 0.000237 2ebsA 789 0.000361 b.69.13.1,b.69.13.1 146772,146773 3h7nA 729 0.000924 1sqjA 789 0.001077 b.69.13.1,b.69.13.1 105918,105919 2b5nA 323 0.001201 1utcA 363 0.001218 a.118.1.4,b.69.6.1 99914,99915 2cn3A 737 0.003610 3b7fA 394 0.003630 1ofzA 312 0.004309 b.68.8.1 86978 1fwxA 595 0.004961 b.6.1.4,b.69.3.1 60069,60070 2iwkA 642 0.005019 3l2oB 312 0.005739 1q47A 495 0.009243 b.69.12.1 104532 3f6kA 685 0.009713 2w20A 471 0.01607 1zi0A 307 0.02987 3f7fA 729 0.03154 2jkbA 686 0.04615 2w5nA 367 0.04724 1shyB 551 0.06591 b.69.12.1,g.16.2.1 105565,105566 1suuA 312 0.07154 b.68.10.1 99006 2jd4A 383 0.08594 3kciA 389 0.09076 2sliA 679 0.09473 b.29.1.9,b.68.1.1 24274,27611 3cu9A 314 0.1066 2v05A 311 0.1716 1wl7A 312 0.1855 b.67.2.1 120996 3d5yA 314 0.2188 3l6vA 370 0.2221 2bibA 547 0.2317 b.109.1.1,d.157.1.8 128581,128582 2z8rA 591 0.2423 1wp5A 323 0.2789 b.68.10.1 114780 3d60A 314 0.3068 2vw2A 697 0.3179 3silA 379 0.3228 b.68.1.1 27542 3d61A 314 0.4067 2w38A 438 0.4356 3kvcA 533 0.5250 1olzA 663 0.5558 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2uzxB 727 0.6398 3fsnA 533 0.6832 3kstA 306 0.9848 1gyhA 318 1.007 b.67.2.1 70757 2j04A 588 1.296 3lv4A 456 1.298 3flpA 217 1.439 1pz7A 204 1.630 b.29.1.4 95405 2bwrA 401 2.081 2ej8A 160 2.208 3c2uA 538 2.755 1so7A 382 3.130 b.68.1.1 112106 1vkdA 338 3.482 b.67.2.4 108644 3fz3A 531 3.594 3c3vA 510 4.036 1qu0A 191 4.047 b.29.1.4 24225 3cpnA 330 4.558 1iwlA 182 4.831 b.125.1.1 83757 3ah2A 288 5.085 2ex2A 458 5.167 e.3.1.3 132497 1xd5A 112 5.304 b.78.1.1 115155 1kj1D 109 5.696 b.78.1.1 68639 1uv4A 293 5.964 b.67.2.1 119705 2hboA 158 5.969 d.38.1.5 136319 3c7fA 487 5.993 3a0eA 110 6.010 1c3mA 147 6.651 b.77.3.1 27983 1yrzA 528 7.205 b.29.1.23,b.67.2.1 123948,123949 3cjyA 259 7.279 1zvtA 256 7.884 2bf6A 449 9.221 1jpcA 109 9.498 b.78.1.1 27986 1qxmA 300 9.498 b.42.2.1,b.42.2.1 96533,96534 2wl1A 191 9.730 2ac1A 541 10.37 2r16A 182 10.63 3fijA 254 10.87 3c12A 138 11.67 3k1uA 330 12.84 1ntvA 152 13.48 b.55.1.2 86168 2ihoA 293 14.28 b.42.2.1,d.3.1.18 147681,147682 3kb5A 193 14.51 2ww5A 468 14.55 2o34A 250 15.34 d.96.2.2 148565 2vouA 397 16.17 c.3.1.2,d.16.1.2 153389,153390 1xksA 450 18.55 b.69.14.1 115422 1w5dA 462 21.02 e.3.1.3 120642 1h30A 422 21.31 b.29.1.4,b.29.1.4 76604,76605 3kptA 355 21.76 2iwgB 181 22.92 b.29.1.22 145548 2biwA 490 22.99 2aukA 190 24.26 1pbeA 394 25.32 c.3.1.2,d.16.1.2 30338,37869 1jfuA 186 25.42 c.47.1.10 62940 2w1vA 276 25.44 3hkxA 283 25.57 3fzyA 234 25.99 2f0xA 148 26.54 d.38.1.5 132673 3dzwA 109 27.78 2hfsA 332 28.36 2hyxA 352 29.90 1aqcA 172 31.72 b.55.1.2 26983 2h0bA 184 31.93 3bodA 178 32.72 2elaA 175 33.78 1at0A 145 33.98 b.86.1.1 28374 2ww8A 893 34.02 3db5A 151 34.73 1f89A 291 34.90 d.160.1.1 64988 2dpfA 115 35.03 2f6eA 127 37.91 1v9wA 130 38.13 c.47.1.16 108453 2f9sA 151 38.22 c.47.1.10 133168 2gf3A 389 38.34 c.3.1.2,d.16.1.3 135070,135071 3k2iA 422 38.38 3kcmA 154 39.27 1h09A 338 39.34 b.109.1.1,c.1.8.8 83420,83421 3l5eA 414 39.93 2pimA 141 41.16 3lhnA 126 41.58 2ea7A 434 42.80 3c9zA 258 46.45 2d5fA 493 47.14 1w8oA 601 48.30 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2cohA 202 48.48 a.4.5.4,b.82.3.2 130677,130678 2zcwA 202 48.88 3d3iA 761 49.14 3fosA 214 49.17 3bk5A 237 49.48 3a3dA 453 49.59 1n9bA 265 50.45 e.3.1.1 85463 2pz4A 239 50.74 1s1dA 331 51.71 b.67.3.1 98344 2fy6A 143 51.73 c.47.1.10 134344 1lu4A 136 52.09 c.47.1.10 91124 1gqzA 274 52.20 d.21.1.1,d.21.1.1 83311,83312 1a9xB 379 52.47 c.8.3.1,c.23.16.1 30732,31409 1e58A 249 53.13 c.60.1.1 59262 1zatA 250 53.77 b.160.1.1,d.335.1.1 124845,124846 3dxeA 140 53.86 2e11A 266 55.06 1o97D 320 57.00 c.26.2.3,c.31.1.2 81233,81234 3e29A 144 57.71 1zkiA 133 58.76 d.38.1.5 125199 3ef2A 293 59.48 3ld7A 101 59.63 2gagB 405 61.17 3lp9A 227 62.05 1wguA 136 62.69 b.55.1.2 114623 3ihxA 152 64.01 1juhA 350 64.05 b.82.1.5 71884 2wk0A 265 65.68 2bjfA 329 66.19 3fx3A 237 67.56 1y7mA 164 68.29 b.160.1.1,d.7.1.1 122696,122697 3idaA 587 68.31 2wjsA 608 68.45 3hlkA 446 69.04 1x31B 404 69.46 2dlxA 153 71.77 c.47.1.24 146543 3ewkA 227 72.00 1es5A 262 72.37 e.3.1.1 42679 3b3qE 197 72.70 b.29.1.4 154813 2pfrA 294 75.80 2aa4A 289 76.79 c.55.1.10,c.55.1.10 126465,126466 2a2cA 478 76.92 3gf8A 296 77.02 1k9vF 201 77.71 c.23.16.1 68365 2h4uA 145 80.24 d.38.1.5 136082 1xzoA 174 80.96 c.47.1.10 122474 1h4gA 207 82.22 b.29.1.11 70863 1z5yE 149 82.73 c.47.1.10 124498 1k38A 254 83.28 e.3.1.1 84303 1jtdB 273 83.82 b.69.5.2 67265 1f5jA 199 85.30 b.29.1.11 24342 2exnA 136 86.11 b.165.1.1 132562 2w08A 204 86.16 1ybiA 288 86.81 2jayA 291 87.30 1sh8A 154 87.89 d.38.1.5 105549 3a35A 190 88.18 1knmA 130 88.23 b.42.2.1 72781 3iosA 150 88.95 1rypG 244 89.22 d.153.1.4 41938 3h3zA 235 89.23 3liuA 402 89.53 3d8dA 148 89.97