# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h14A 317 1.25e-15 1gotB 340 1.36e-15 b.69.4.1 27648 3emhA 318 1.38e-15 2gnqA 336 1.52e-15 2bcjB 340 1.81e-15 b.69.4.1 128289 2pbiB 354 1.81e-15 1a0rB 340 2.65e-15 b.69.4.1 27658 2qc5A 300 5.75e-15 1gxrA 337 7.31e-15 b.69.4.1 70722 1nr0A 611 8.60e-15 b.69.4.1,b.69.4.1 86078,86079 2z2nA 299 1.22e-14 3frxA 319 1.55e-14 1r5mA 425 1.61e-14 3fm0A 345 3.01e-14 3fvzA 329 4.02e-14 1rwiA 270 4.73e-14 b.68.9.1 97987 1k8kC 372 1.01e-13 b.69.4.1 68308 3acpA 417 1.06e-13 1l0qA 391 1.24e-13 b.1.3.1,b.69.2.3 77644,77645 1q7fA 286 1.41e-13 b.68.9.1 96036 3dxkC 372 1.62e-13 1pguA 615 1.63e-13 b.69.4.1,b.69.4.1 88069,88070 1ri6A 343 2.22e-13 b.69.11.1 97503 3hrpA 409 2.60e-13 3ei4B 436 2.91e-13 2dg1A 333 3.24e-13 b.68.6.1 131493 2qxvA 361 3.41e-13 1nexB 464 4.24e-13 a.158.1.1,b.69.4.1 80443,80444 3bwsA 433 5.32e-13 2aq5A 402 6.33e-13 3dwlC 377 6.61e-13 2oajA 902 7.32e-13 3ei3B 383 7.68e-13 3hfqA 347 7.70e-13 2ovrB 445 7.72e-13 a.158.1.1,b.69.4.1 145735,145736 3k26A 366 8.61e-13 3dw8B 447 9.13e-13 3greA 437 9.79e-13 3hxjA 330 9.84e-13 3dsmA 328 1.26e-12 3li3A 314 1.32e-12 2p4oA 306 1.40e-12 b.68.6.3 149216 2gc7A 386 1.54e-12 b.69.2.1 134954 3i2nA 357 1.55e-12 1kb0A 677 1.62e-12 a.3.1.6,b.70.1.1 68378,68379 3iiwA 365 1.62e-12 2oizA 361 1.81e-12 1pbyB 337 2.18e-12 b.69.2.2 94422 2hesX 330 2.18e-12 1p22A 435 2.25e-12 a.158.1.1,b.69.4.1 87715,87716 2pm7B 297 2.31e-12 1yfqA 342 2.49e-12 b.69.4.2 116680 3li5A 314 2.59e-12 1pjxA 314 2.65e-12 b.68.6.1 104167 3c75H 426 2.76e-12 3e5zA 296 2.90e-12 2qe8A 343 3.18e-12 3c99A 432 3.56e-12 3i1cA 324 4.42e-12 3cfsB 414 5.05e-12 2ad6A 571 5.75e-12 b.70.1.1 126568 3li4A 314 5.86e-12 1jmxB 349 6.56e-12 b.69.2.2 66906 2agyA 361 7.40e-12 2ghsA 326 7.41e-12 b.68.6.1 135209 2ojhA 297 8.03e-12 3gfcA 425 8.08e-12 3dr2A 305 1.04e-11 2iaaA 390 1.10e-11 2vduB 450 1.25e-11 2oitA 434 1.37e-11 3f3fA 351 1.44e-11 1s4uX 407 1.56e-11 b.69.4.1 112027 2hqsA 415 1.65e-11 b.68.4.1,c.51.2.1 136662,136663 1sq9A 397 1.74e-11 b.69.4.1 105889 3fgbA 361 2.45e-11 1w6sA 599 3.82e-11 b.70.1.1 114284 1yiqA 689 3.87e-11 2fp8A 322 4.03e-11 2w18A 356 4.18e-11 1kv9A 668 4.59e-11 a.3.1.6,b.70.1.1 73056,73057 1k32A 1045 5.00e-11 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1jofA 365 7.86e-11 b.69.10.1 71775 3kyaA 496 8.73e-11 3c5mA 396 9.28e-11 2d5lA 706 9.28e-11 2j04B 524 9.81e-11 3g4eA 297 1.36e-10 1npeA 267 1.39e-10 b.68.5.1 92032 2be1A 339 1.95e-10 1xipA 388 3.14e-10 b.69.14.1 115360 1v04A 355 4.65e-10 b.68.6.2 100240 3ei3A 1158 4.76e-10 3e0cA 1140 6.05e-10 1orvA 728 9.28e-10 b.70.3.1,c.69.1.24 87354,87355 2hu5A 582 1.00e-09 b.69.7.2,c.69.1.33 136763,136764 2gopA 347 2.14e-09 3hacA 728 4.05e-09 2z3zA 706 4.18e-09 1cruA 454 4.91e-09 b.68.2.1 27617 3llpA 493 5.83e-09 2wftA 458 7.81e-09 1h2wA 710 1.16e-08 b.69.7.1,c.69.1.4 76596,76597 1yr2A 741 1.18e-08 1k3iA 656 1.51e-08 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qr5A 582 1.90e-08 b.69.7.2,c.69.1.33 151278,151279 3g0bA 740 1.97e-08 2bklA 695 6.95e-08 3dasA 347 1.04e-07 1o6gA 710 1.47e-07 b.69.7.1,c.69.1.4 81087,81088 2iwaA 266 1.82e-06 2ismA 352 2.74e-06 2g8sA 353 4.37e-06 3elqA 571 4.69e-06 2p9wA 334 7.36e-06 1zgkA 308 2.11e-05 b.68.11.1 145998 3ii7A 306 3.24e-05 2vpjA 301 3.26e-05 2wg4B 457 3.54e-05 1x2jA 316 4.90e-05 b.68.11.1 121643 2fluX 308 6.79e-05 b.68.11.1 133750 2wg3C 463 0.000114 2wozA 318 0.000135 2uvkA 357 0.000274 1mdaH 368 0.000327 b.69.2.1 27637 2eceA 462 0.000594 1h6lA 353 0.000749 b.68.3.1 60687 3hx6A 570 0.001028 2zwaA 695 0.001212 3gc3B 363 0.003337 2zuxA 591 0.005498 2ebsA 789 0.007359 b.69.13.1,b.69.13.1 146772,146773 1sqjA 789 0.009835 b.69.13.1,b.69.13.1 105918,105919 3b7fA 394 0.01508 3h6jA 438 0.01801 3hxrA 761 0.01908 1utcA 363 0.02351 a.118.1.4,b.69.6.1 99914,99915 2b5nA 323 0.02478 2zuyA 620 0.02497 2v05A 311 0.05585 1fwxA 595 0.06852 b.6.1.4,b.69.3.1 60069,60070 3f6kA 685 0.07330 2cn3A 737 0.0998 2iwkA 642 0.1053 3l2oB 312 0.1073 3kciA 389 0.1217 2bibA 547 0.1342 b.109.1.1,d.157.1.8 128581,128582 2sliA 679 0.1547 b.29.1.9,b.68.1.1 24274,27611 3h7nA 729 0.1563 2jd4A 383 0.1619 2jkbA 686 0.2311 2w20A 471 0.2427 1ofzA 312 0.2484 b.68.8.1 86978 2w5nA 367 0.3445 1q47A 495 0.4004 b.69.12.1 104532 1zi0A 307 0.7739 2vw2A 697 0.8186 3f7fA 729 0.8806 2ww5A 468 0.8903 1suuA 312 0.9738 b.68.10.1 99006 3silA 379 1.048 b.68.1.1 27542 1shyB 551 1.472 b.69.12.1,g.16.2.1 105565,105566 1wl7A 312 1.654 b.67.2.1 120996 1jtdB 273 1.827 b.69.5.2 67265 3cu9A 314 2.149 3d61A 314 2.197 1pz7A 204 2.660 b.29.1.4 95405 3kvcA 533 2.669 1xd5A 112 3.233 b.78.1.1 115155 3a0eA 110 3.322 1olzA 663 3.356 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1h09A 338 3.370 b.109.1.1,c.1.8.8 83420,83421 3c12A 138 3.408 3fsnA 533 3.500 2w38A 438 3.737 1qu0A 191 4.184 b.29.1.4 24225 3kstA 306 4.442 3d5yA 314 4.518 1wp5A 323 4.610 b.68.10.1 114780 1so7A 382 4.665 b.68.1.1 112106 2o62A 270 5.026 b.60.1.9,b.60.1.9 148622,148623 3d60A 314 5.623 2uzxB 727 5.709 2j8gA 339 5.767 b.109.1.1,c.1.8.8 147915,147916 2z8rA 591 5.916 3lv4A 456 5.969 2f6eA 127 6.006 2j04A 588 6.259 3kptA 355 6.430 1yrzA 528 7.141 b.29.1.23,b.67.2.1 123948,123949 3l6vA 370 7.257 1xksA 450 7.462 b.69.14.1 115422 2ac1A 541 7.478 1jpcA 109 7.538 b.78.1.1 27986 1kj1D 109 7.804 b.78.1.1 68639 2wl1A 191 9.062 3c3vA 510 9.467 3c2uA 538 9.642 2ww8A 893 9.850 1h30A 422 10.27 b.29.1.4,b.29.1.4 76604,76605 1gyhA 318 10.27 b.67.2.1 70757 1wlgA 299 12.33 b.152.1.1 114726 1qxmA 300 12.50 b.42.2.1,b.42.2.1 96533,96534 2bf6A 449 12.67 1w8oA 601 12.83 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3dzwA 109 13.68 2r16A 182 14.24 2aukA 190 14.34 1iwlA 182 14.79 b.125.1.1 83757 3fz3A 531 14.83 2dpfA 115 15.06 1c3mA 147 15.37 b.77.3.1 27983 2e11A 266 15.92 2wjsA 608 16.31 2ej8A 160 16.39 2bgzA 299 16.81 1zvtA 256 17.12 1uypA 432 18.03 b.29.1.19,b.67.2.3 100176,100177 3bodA 178 18.18 2hboA 158 18.39 d.38.1.5 136319 1gqzA 274 18.58 d.21.1.1,d.21.1.1 83311,83312 2jxwA 75 18.66 3cjyA 259 19.90 3c9zA 258 20.15 2h0bA 184 20.27 2gu1A 361 20.68 1vkdA 338 22.28 b.67.2.4 108644 3flpA 217 23.60 3ewkA 227 23.90 2iwgB 181 24.43 b.29.1.22 145548 2cohA 202 24.82 a.4.5.4,b.82.3.2 130677,130678 3ef2A 293 25.22 2zpdA 190 25.83 2bwrA 401 26.07 3cpnA 330 26.60 3ah2A 288 26.66 3gf8A 296 26.71 2zcwA 202 26.90 3bk5A 237 28.30 3d7eO 505 29.20 2yzqA 282 29.45 d.37.1.1,d.37.1.1 153904,153905 3flcO 518 29.92 3l0qA 554 31.52 1f89A 291 31.62 d.160.1.1 64988 3fosA 214 32.81 1at0A 145 33.69 b.86.1.1 28374 3fzyA 234 34.07 3l5eA 414 34.83 1ksiA 642 35.11 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2i7fA 108 35.61 3kb5A 193 36.38 1uv4A 293 36.80 b.67.2.1 119705 3gbtA 504 37.37 2gkeA 274 38.62 d.21.1.1,d.21.1.1 135329,135330 3hkxA 283 39.38 1s1dA 331 39.42 b.67.3.1 98344 2bc4A 211 39.49 3ll3A 504 39.89 2w40A 503 40.09 2d4wA 504 40.42 3kcmA 154 40.69 2b20A 403 41.09 b.1.18.20,c.69.1.2 127685,127686 2hyxA 352 42.08 3lhnA 126 42.13 1bfgA 146 42.45 b.42.1.1 25485 1w0pA 781 42.61 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1ntvA 152 42.68 b.55.1.2 86168 1zxuA 217 42.88 d.23.1.2 125796 2w1vA 276 43.08 1w2tA 432 43.53 b.29.1.19,b.67.2.3 120607,120608 2q4mA 217 43.78 d.23.1.2 139870 3ezwA 526 45.45 3db5A 151 47.19 2e4qA 109 47.52 3hd8A 389 47.69 2zf5O 497 48.22 3eurA 142 48.66 2vouA 397 48.89 c.3.1.2,d.16.1.2 153389,153390 3hz6A 511 49.63 2in5A 207 49.79 b.177.1.1 147736 3ibzA 191 51.18 3c7fA 487 51.67 3gkeA 349 52.23 1bxoA 323 52.38 b.50.1.2 26805 2ayhA 214 52.78 b.29.1.2 24172 2fy6A 143 53.25 c.47.1.10 134344 3ld7A 101 54.31 3ge2A 130 54.73 1p4kA 295 55.29 d.153.1.5 87772 2f9sA 151 55.98 c.47.1.10 133168 1vqoA 240 56.41 b.34.5.3,b.40.4.5 120361,120362 3h46O 506 57.24 2hfsA 332 61.61 3h3nO 506 61.88 3hmyA 450 62.17 2kppA 114 63.02 2e9qA 459 63.04 2elaA 175 63.37 3equA 542 64.09 3fvhA 237 64.49 2gbwA 454 65.12 2pz4A 239 65.58 1jfuA 186 66.31 c.47.1.10 62940 3gg4A 554 67.12 1mppA 361 67.47 b.50.1.2 26856 3k2iA 422 68.57 1xzoA 174 69.36 c.47.1.10 122474 2ggtA 164 69.86 c.47.1.10 135156 2ihoA 293 70.03 b.42.2.1,d.3.1.18 147681,147682 3b3qE 197 71.44 b.29.1.4 154813 2fdbM 164 71.59 b.42.1.1 145162 2vu9A 444 72.96 3hlkA 446 73.79 2f0xA 148 73.82 d.38.1.5 132673 2p7jA 287 74.10 d.110.6.2,d.110.6.2 149287,149288 1nnxA 109 74.31 b.40.10.1 92013 1st9A 143 75.75 c.47.1.10 98987 1wmvA 54 76.01 1y7mA 164 76.28 b.160.1.1,d.7.1.1 122696,122697 2biwA 490 76.63 1ybiA 288 77.01 2pimA 141 77.20 1xe7A 203 77.79 b.82.1.16 115213 2fs2A 151 77.79 d.38.1.5 134003 1vm9A 111 78.58 b.33.1.1 108886 2ywnA 157 78.90 2q3wA 111 79.76 b.33.1.1 139813 1f5mA 180 81.01 d.110.2.1 40895 3me7A 170 81.20 1zkiA 133 81.55 d.38.1.5 125199 2z4iA 233 82.16 1xj4A 119 82.24 d.110.3.2 122027 2d5fA 493 82.64 3malA 199 82.73 3l48A 94 83.91 2burA 209 84.22 b.3.6.1 129227 2yzhA 171 84.72 2zylA 386 86.42 1sr4C 166 86.51 b.42.2.1 105950 1twuA 139 86.88 d.32.1.8 107413 2o34A 250 86.98 d.96.2.2 148565 2r19A 159 87.03 2uxtA 451 87.70 2k7pA 188 88.19 3hn9A 123 89.19 1y4wA 518 89.92 b.29.1.19,b.67.2.3 116470,116471