# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gotB 340 1.24e-16 b.69.4.1 27648 2pbiB 354 1.37e-16 2h14A 317 1.52e-16 3emhA 318 2.03e-16 2gnqA 336 2.24e-16 2bcjB 340 2.34e-16 b.69.4.1 128289 1a0rB 340 6.61e-16 b.69.4.1 27658 2qc5A 300 1.56e-15 1nr0A 611 1.83e-15 b.69.4.1,b.69.4.1 86078,86079 1gxrA 337 1.93e-15 b.69.4.1 70722 1r5mA 425 6.31e-15 3frxA 319 7.08e-15 2z2nA 299 7.33e-15 3fm0A 345 8.34e-15 1k8kC 372 1.25e-14 b.69.4.1 68308 3fvzA 329 1.25e-14 1rwiA 270 1.35e-14 b.68.9.1 97987 3dxkC 372 2.04e-14 2qxvA 361 2.04e-14 3acpA 417 2.14e-14 3ei4B 436 3.02e-14 1ri6A 343 6.39e-14 b.69.11.1 97503 3dwlC 377 6.84e-14 2aq5A 402 7.12e-14 1l0qA 391 7.48e-14 b.1.3.1,b.69.2.3 77644,77645 3k26A 366 7.99e-14 2dg1A 333 9.51e-14 b.68.6.1 131493 3ei3B 383 9.79e-14 1nexB 464 9.85e-14 a.158.1.1,b.69.4.1 80443,80444 1q7fA 286 9.98e-14 b.68.9.1 96036 1pguA 615 1.04e-13 b.69.4.1,b.69.4.1 88069,88070 3dw8B 447 1.51e-13 3iiwA 365 1.63e-13 3c99A 432 1.66e-13 3bwsA 433 2.38e-13 2ovrB 445 2.39e-13 a.158.1.1,b.69.4.1 145735,145736 3greA 437 2.71e-13 3i2nA 357 2.76e-13 1p22A 435 3.02e-13 a.158.1.1,b.69.4.1 87715,87716 2pm7B 297 3.03e-13 2hesX 330 3.29e-13 3cfsB 414 3.40e-13 2oizA 361 3.97e-13 1yfqA 342 5.16e-13 b.69.4.2 116680 1pbyB 337 5.59e-13 b.69.2.2 94422 2oajA 902 6.32e-13 3hrpA 409 7.75e-13 1pjxA 314 8.45e-13 b.68.6.1 104167 3li3A 314 8.97e-13 2qe8A 343 9.22e-13 3hfqA 347 9.42e-13 3c75H 426 9.73e-13 3dsmA 328 1.00e-12 2p4oA 306 1.02e-12 b.68.6.3 149216 3gfcA 425 1.02e-12 1jmxB 349 1.09e-12 b.69.2.2 66906 3e5zA 296 1.32e-12 3li5A 314 1.35e-12 2gc7A 386 1.42e-12 b.69.2.1 134954 3hxjA 330 1.50e-12 2vduB 450 1.55e-12 3f3fA 351 1.61e-12 2agyA 361 1.82e-12 2ojhA 297 2.33e-12 1s4uX 407 2.59e-12 b.69.4.1 112027 2oitA 434 2.62e-12 3li4A 314 2.68e-12 2iaaA 390 2.92e-12 1sq9A 397 3.11e-12 b.69.4.1 105889 3i1cA 324 3.39e-12 1kb0A 677 3.72e-12 a.3.1.6,b.70.1.1 68378,68379 2ghsA 326 4.10e-12 b.68.6.1 135209 2hqsA 415 4.32e-12 b.68.4.1,c.51.2.1 136662,136663 2ad6A 571 5.70e-12 b.70.1.1 126568 3fgbA 361 1.07e-11 3dr2A 305 1.08e-11 3kyaA 496 1.26e-11 1yiqA 689 1.51e-11 2j04B 524 1.67e-11 2fp8A 322 2.12e-11 2w18A 356 2.25e-11 1jofA 365 3.24e-11 b.69.10.1 71775 1kv9A 668 5.77e-11 a.3.1.6,b.70.1.1 73056,73057 2d5lA 706 1.03e-10 2be1A 339 1.09e-10 1npeA 267 1.33e-10 b.68.5.1 92032 3c5mA 396 1.49e-10 3g4eA 297 1.71e-10 1k32A 1045 1.80e-10 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1xipA 388 1.81e-10 b.69.14.1 115360 1w6sA 599 2.33e-10 b.70.1.1 114284 1orvA 728 2.44e-10 b.70.3.1,c.69.1.24 87354,87355 3e0cA 1140 2.52e-10 1v04A 355 4.66e-10 b.68.6.2 100240 2hu5A 582 6.77e-10 b.69.7.2,c.69.1.33 136763,136764 3ei3A 1158 1.24e-09 2gopA 347 1.59e-09 3llpA 493 2.07e-09 1yr2A 741 2.25e-09 3hacA 728 2.36e-09 1cruA 454 4.20e-09 b.68.2.1 27617 2z3zA 706 4.71e-09 3g0bA 740 5.53e-09 1k3iA 656 5.83e-09 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2wftA 458 9.66e-09 1h2wA 710 1.50e-08 b.69.7.1,c.69.1.4 76596,76597 2qr5A 582 2.11e-08 b.69.7.2,c.69.1.33 151278,151279 3dasA 347 9.88e-08 2bklA 695 4.38e-07 1o6gA 710 4.76e-07 b.69.7.1,c.69.1.4 81087,81088 2ismA 352 4.48e-06 2iwaA 266 4.72e-06 2g8sA 353 5.11e-06 2p9wA 334 3.73e-05 1zgkA 308 5.19e-05 b.68.11.1 145998 2vpjA 301 5.56e-05 2wg4B 457 0.000101 1x2jA 316 0.000148 b.68.11.1 121643 2fluX 308 0.000153 b.68.11.1 133750 2wg3C 463 0.000176 3elqA 571 0.000438 2wozA 318 0.000462 2uvkA 357 0.000534 3ii7A 306 0.000558 2eceA 462 0.000666 1mdaH 368 0.001490 b.69.2.1 27637 1h6lA 353 0.001565 b.68.3.1 60687 3hx6A 570 0.002923 2zwaA 695 0.005841 3hxrA 761 0.006529 3gc3B 363 0.01174 3h6jA 438 0.03005 3l2oB 312 0.03996 1utcA 363 0.1322 a.118.1.4,b.69.6.1 99914,99915 2zuxA 591 0.1339 2v05A 311 0.1589 3h7nA 729 0.1685 3b7fA 394 0.1712 3f6kA 685 0.1785 3f7fA 729 0.1940 2bibA 547 0.2044 b.109.1.1,d.157.1.8 128581,128582 2jkbA 686 0.3340 3kciA 389 0.3415 2b5nA 323 0.4488 2ebsA 789 0.4726 b.69.13.1,b.69.13.1 146772,146773 1fwxA 595 0.5920 b.6.1.4,b.69.3.1 60069,60070 2jd4A 383 0.6504 2iwkA 642 0.6650 1q47A 495 0.7811 b.69.12.1 104532 2w20A 471 0.7945 1ofzA 312 0.8559 b.68.8.1 86978 3kvcA 533 1.157 2w5nA 367 1.333 1zi0A 307 1.949 2zuyA 620 2.014 1suuA 312 2.590 b.68.10.1 99006 1wl7A 312 2.698 b.67.2.1 120996 1sqjA 789 2.752 b.69.13.1,b.69.13.1 105918,105919 1shyB 551 4.372 b.69.12.1,g.16.2.1 105565,105566 3fsnA 533 4.569 1h09A 338 4.667 b.109.1.1,c.1.8.8 83420,83421 2sliA 679 4.819 b.29.1.9,b.68.1.1 24274,27611 1so7A 382 5.561 b.68.1.1 112106 1pz7A 204 5.774 b.29.1.4 95405 3cu9A 314 6.325 3kstA 306 7.163 1wp5A 323 7.349 b.68.10.1 114780 2ac1A 541 7.447 3d61A 314 8.084 3silA 379 10.19 b.68.1.1 27542 3kptA 355 11.23 3d60A 314 11.95 2ww5A 468 11.96 2as0A 396 12.64 b.122.1.9,c.66.1.51 127227,127228 1jtdB 273 14.10 b.69.5.2 67265 2vw2A 697 14.40 2f6eA 127 15.46 2hboA 158 15.53 d.38.1.5 136319 2wl1A 191 16.83 3fz3A 531 17.06 1a9xB 379 18.00 c.8.3.1,c.23.16.1 30732,31409 3c12A 138 18.06 1qxmA 300 19.43 b.42.2.1,b.42.2.1 96533,96534 3ewkA 227 19.48 3l6vA 370 20.51 3d3iA 761 20.53 3d5yA 314 21.28 3cjyA 259 22.08 2uzxB 727 22.22 2j04A 588 23.31 3hkxA 283 23.93 1gyhA 318 23.95 b.67.2.1 70757 1xd5A 112 24.29 b.78.1.1 115155 2j8gA 339 24.45 b.109.1.1,c.1.8.8 147915,147916 1c3mA 147 25.28 b.77.3.1 27983 1at0A 145 25.48 b.86.1.1 28374 2o62A 270 25.90 b.60.1.9,b.60.1.9 148622,148623 2ej8A 160 27.72 3hlkA 446 29.85 2z8rA 591 30.94 3a0eA 110 31.13 2hfsA 332 31.46 3k2iA 422 32.87 3c9zA 258 33.68 1vkdA 338 34.24 b.67.2.4 108644 1yrzA 528 34.32 b.29.1.23,b.67.2.1 123948,123949 1ejxC 567 34.35 b.92.1.1,c.1.9.2 83184,83185 1wuuA 399 34.88 d.14.1.5,d.58.26.7 114900,114901 3bk5A 237 35.78 1ybiA 288 36.81 3flcO 518 37.13 3d7eO 505 37.43 1qu0A 191 37.55 b.29.1.4 24225 2p3yA 491 37.98 e.65.1.1 149190 2biwA 490 38.69 2r16A 182 41.44 2ww8A 893 41.83 2burA 209 43.30 b.3.6.1 129227 2zcwA 202 43.97 1iwlA 182 44.06 b.125.1.1 83757 3hmyA 450 44.18 2w1vA 276 44.24 2aukA 190 44.98 3flpA 217 45.27 1xf1A 926 45.47 1zvtA 256 46.18 2gu1A 361 46.88 1xhbA 472 47.72 b.42.2.1,c.68.1.17 115290,115291 2f2uA 402 47.98 1u0kA 288 49.67 d.21.1.2,d.21.1.2 107547,107548 1t3qB 788 49.74 d.41.1.1,d.133.1.1 106369,106370 3buuA 229 50.86 2iwgB 181 50.99 b.29.1.22 145548 1f89A 291 51.74 d.160.1.1 64988 1olzA 663 52.69 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1uv4A 293 52.70 b.67.2.1 119705 2vu9A 444 52.74 3kb5A 193 53.09 2wjsA 608 53.65 2e11A 266 55.64 1bu6O 501 56.01 c.55.1.4,c.55.1.4 33499,33500 1w18A 493 56.05 2w38A 438 56.69 1kj1D 109 58.40 b.78.1.1 68639 3bodA 178 59.23 3pcgA 200 59.48 b.3.6.1 22647 3l5eA 414 60.05 1jfuA 186 60.10 c.47.1.10 62940 1yqzA 438 60.26 2cn3A 737 60.44 3gbtA 504 61.18 2cohA 202 61.26 a.4.5.4,b.82.3.2 130677,130678 2yzqA 282 62.09 d.37.1.1,d.37.1.1 153904,153905 3ah2A 288 62.44 2d4wA 504 64.20 1jpcA 109 64.65 b.78.1.1 27986 3gf8A 296 65.57 2pz4A 239 65.84 2zf5O 497 66.30 2wjoA 412 67.07 1s1dA 331 67.38 b.67.3.1 98344 2h0bA 184 70.38 2b20A 403 71.53 b.1.18.20,c.69.1.2 127685,127686 3dtbA 624 72.40 3lv4A 456 73.22 2f0xA 148 73.50 d.38.1.5 132673 2jmzA 186 73.73 1v97A 1332 75.69 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1uliA 460 79.31 b.33.1.2,d.129.3.3 107921,107922 2ayhA 214 80.68 b.29.1.2 24172 1ylhA 560 81.65 1q98A 165 82.14 c.47.1.10 96253 1ntvA 152 82.27 b.55.1.2 86168 2f9sA 151 86.14 c.47.1.10 133168 2v2fF 390 87.35 3kcmA 154 87.88 1q35A 320 88.75 c.94.1.1 95661 3db5A 151 88.87 2jxwA 75 89.11