# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gotB 340 1.61e-17 b.69.4.1 27648 2pbiB 354 1.67e-17 2h14A 317 1.72e-17 2gnqA 336 2.15e-17 3emhA 318 2.17e-17 2bcjB 340 2.22e-17 b.69.4.1 128289 1a0rB 340 3.43e-17 b.69.4.1 27658 1gxrA 337 1.13e-16 b.69.4.1 70722 2qc5A 300 1.45e-16 1nr0A 611 1.74e-16 b.69.4.1,b.69.4.1 86078,86079 1r5mA 425 2.85e-16 3fm0A 345 3.30e-16 3frxA 319 3.69e-16 2z2nA 299 3.99e-16 3fvzA 329 1.07e-15 1k8kC 372 1.31e-15 b.69.4.1 68308 1rwiA 270 1.38e-15 b.68.9.1 97987 3acpA 417 1.46e-15 1pguA 615 2.92e-15 b.69.4.1,b.69.4.1 88069,88070 3ei4B 436 3.13e-15 3dxkC 372 3.26e-15 2qxvA 361 3.46e-15 1ri6A 343 4.46e-15 b.69.11.1 97503 1l0qA 391 4.62e-15 b.1.3.1,b.69.2.3 77644,77645 2aq5A 402 5.82e-15 3hrpA 409 8.26e-15 1nexB 464 9.55e-15 a.158.1.1,b.69.4.1 80443,80444 3ei3B 383 1.04e-14 3dwlC 377 1.09e-14 3k26A 366 1.10e-14 1q7fA 286 1.11e-14 b.68.9.1 96036 2dg1A 333 1.30e-14 b.68.6.1 131493 3greA 437 1.64e-14 3dw8B 447 1.74e-14 3hfqA 347 1.74e-14 2oajA 902 1.79e-14 3bwsA 433 1.91e-14 3i2nA 357 2.02e-14 2ovrB 445 2.07e-14 a.158.1.1,b.69.4.1 145735,145736 3iiwA 365 2.46e-14 2hesX 330 3.75e-14 1yfqA 342 3.81e-14 b.69.4.2 116680 3c99A 432 3.85e-14 2p4oA 306 3.98e-14 b.68.6.3 149216 3dsmA 328 4.19e-14 2pm7B 297 4.42e-14 1p22A 435 5.09e-14 a.158.1.1,b.69.4.1 87715,87716 1kb0A 677 5.19e-14 a.3.1.6,b.70.1.1 68378,68379 2oizA 361 5.39e-14 3cfsB 414 5.52e-14 2gc7A 386 6.88e-14 b.69.2.1 134954 3hxjA 330 7.65e-14 3li3A 314 7.93e-14 1pbyB 337 8.40e-14 b.69.2.2 94422 2qe8A 343 9.46e-14 3c75H 426 1.02e-13 3e5zA 296 1.33e-13 3li5A 314 1.34e-13 3gfcA 425 1.34e-13 1pjxA 314 1.34e-13 b.68.6.1 104167 1jmxB 349 1.99e-13 b.69.2.2 66906 2ad6A 571 2.16e-13 b.70.1.1 126568 3f3fA 351 2.27e-13 2agyA 361 2.36e-13 2vduB 450 2.38e-13 2ojhA 297 2.49e-13 2oitA 434 2.69e-13 1s4uX 407 3.08e-13 b.69.4.1 112027 2ghsA 326 3.28e-13 b.68.6.1 135209 3li4A 314 3.45e-13 3i1cA 324 3.69e-13 2hqsA 415 4.08e-13 b.68.4.1,c.51.2.1 136662,136663 2iaaA 390 4.23e-13 1sq9A 397 4.97e-13 b.69.4.1 105889 3dr2A 305 8.21e-13 3fgbA 361 9.35e-13 1yiqA 689 1.20e-12 1w6sA 599 1.42e-12 b.70.1.1 114284 2fp8A 322 1.79e-12 1kv9A 668 2.03e-12 a.3.1.6,b.70.1.1 73056,73057 2w18A 356 2.18e-12 2j04B 524 2.34e-12 3kyaA 496 2.47e-12 1k32A 1045 3.19e-12 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2d5lA 706 4.66e-12 1jofA 365 4.86e-12 b.69.10.1 71775 3c5mA 396 7.94e-12 1xipA 388 9.26e-12 b.69.14.1 115360 2be1A 339 1.21e-11 3ei3A 1158 1.38e-11 3g4eA 297 1.85e-11 1npeA 267 1.94e-11 b.68.5.1 92032 1v04A 355 2.41e-11 b.68.6.2 100240 3e0cA 1140 2.74e-11 2hu5A 582 4.04e-11 b.69.7.2,c.69.1.33 136763,136764 1orvA 728 4.86e-11 b.70.3.1,c.69.1.24 87354,87355 2gopA 347 1.56e-10 1cruA 454 2.23e-10 b.68.2.1 27617 3llpA 493 2.86e-10 2z3zA 706 2.92e-10 3hacA 728 2.93e-10 2wftA 458 3.45e-10 1yr2A 741 3.72e-10 1h2wA 710 6.14e-10 b.69.7.1,c.69.1.4 76596,76597 1k3iA 656 1.63e-09 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qr5A 582 1.75e-09 b.69.7.2,c.69.1.33 151278,151279 3g0bA 740 1.78e-09 2bklA 695 5.83e-09 3dasA 347 1.33e-08 1o6gA 710 1.48e-08 b.69.7.1,c.69.1.4 81087,81088 2ismA 352 5.44e-07 2iwaA 266 7.73e-07 2g8sA 353 7.94e-07 2p9wA 334 1.96e-06 3elqA 571 5.00e-06 2wg4B 457 6.12e-06 1zgkA 308 6.56e-06 b.68.11.1 145998 2vpjA 301 8.95e-06 2wg3C 463 9.91e-06 2fluX 308 1.80e-05 b.68.11.1 133750 3ii7A 306 2.12e-05 1x2jA 316 2.36e-05 b.68.11.1 121643 2uvkA 357 6.68e-05 2wozA 318 6.86e-05 2eceA 462 0.000169 3hx6A 570 0.000236 1mdaH 368 0.000259 b.69.2.1 27637 1h6lA 353 0.000274 b.68.3.1 60687 2zwaA 695 0.000556 3gc3B 363 0.003234 3hxrA 761 0.003558 2zuxA 591 0.004204 2ebsA 789 0.005224 b.69.13.1,b.69.13.1 146772,146773 3h6jA 438 0.007332 3b7fA 394 0.008818 1sqjA 789 0.01193 b.69.13.1,b.69.13.1 105918,105919 3l2oB 312 0.02633 2zuyA 620 0.02668 3f6kA 685 0.02948 2v05A 311 0.03247 1utcA 363 0.03824 a.118.1.4,b.69.6.1 99914,99915 2b5nA 323 0.04109 3h7nA 729 0.06132 2cn3A 737 0.07018 1fwxA 595 0.07685 b.6.1.4,b.69.3.1 60069,60070 2iwkA 642 0.08305 2sliA 679 0.1034 b.29.1.9,b.68.1.1 24274,27611 3kciA 389 0.1035 2w20A 471 0.1138 2jkbA 686 0.1152 2bibA 547 0.1294 b.109.1.1,d.157.1.8 128581,128582 2w5nA 367 0.1669 2jd4A 383 0.1892 1ofzA 312 0.3612 b.68.8.1 86978 2vw2A 697 0.4145 1zi0A 307 0.5101 3f7fA 729 0.5415 1q47A 495 0.5756 b.69.12.1 104532 1suuA 312 0.6382 b.68.10.1 99006 1shyB 551 0.7706 b.69.12.1,g.16.2.1 105565,105566 3silA 379 1.119 b.68.1.1 27542 2ww5A 468 1.153 1wl7A 312 1.247 b.67.2.1 120996 3cu9A 314 1.541 1pz7A 204 1.798 b.29.1.4 95405 3d61A 314 1.825 3kvcA 533 2.064 1so7A 382 2.412 b.68.1.1 112106 3fsnA 533 2.621 1wp5A 323 3.055 b.68.10.1 114780 1jtdB 273 3.594 b.69.5.2 67265 3kstA 306 3.645 3l6vA 370 3.848 1h09A 338 4.008 b.109.1.1,c.1.8.8 83420,83421 3kptA 355 4.060 3c3vA 510 4.208 1olzA 663 4.579 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 3d60A 314 4.871 2f6eA 127 4.881 3d5yA 314 5.366 2hboA 158 5.532 d.38.1.5 136319 2ac1A 541 5.561 2uzxB 727 5.727 2j04A 588 5.849 3lv4A 456 5.978 2wl1A 191 6.061 1gyhA 318 6.156 b.67.2.1 70757 2ww8A 893 6.464 1yrzA 528 6.551 b.29.1.23,b.67.2.1 123948,123949 1xd5A 112 6.867 b.78.1.1 115155 3cjyA 259 7.089 1qu0A 191 7.277 b.29.1.4 24225 3c12A 138 7.639 1qxmA 300 7.683 b.42.2.1,b.42.2.1 96533,96534 3a0eA 110 9.414 2w38A 438 9.509 2j8gA 339 10.03 b.109.1.1,c.1.8.8 147915,147916 1vkdA 338 10.68 b.67.2.4 108644 2ej8A 160 10.92 2wjsA 608 11.48 1iwlA 182 12.20 b.125.1.1 83757 3c2uA 538 12.28 2o62A 270 12.33 b.60.1.9,b.60.1.9 148622,148623 3fz3A 531 12.70 1c3mA 147 12.88 b.77.3.1 27983 3c9zA 258 13.25 1zvtA 256 14.32 3k2iA 422 15.77 2z8rA 591 15.83 1h30A 422 15.88 b.29.1.4,b.29.1.4 76604,76605 2r16A 182 17.22 2gu1A 361 17.41 1w8oA 601 18.00 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2cohA 202 18.34 a.4.5.4,b.82.3.2 130677,130678 3kb5A 193 18.81 3hlkA 446 19.19 3flpA 217 19.54 1w0pA 781 19.80 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2aukA 190 19.92 2b20A 403 19.97 b.1.18.20,c.69.1.2 127685,127686 1at0A 145 20.16 b.86.1.1 28374 2zcwA 202 20.62 1uv4A 293 20.73 b.67.2.1 119705 2iwgB 181 20.88 b.29.1.22 145548 2bf6A 449 21.30 3ah2A 288 22.15 1kj1D 109 22.98 b.78.1.1 68639 1jpcA 109 23.47 b.78.1.1 27986 1xksA 450 24.03 b.69.14.1 115422 3bodA 178 24.78 3cpnA 330 24.87 3bk5A 237 25.30 2ayhA 214 25.66 b.29.1.2 24172 3ewkA 227 26.60 1s1dA 331 28.22 b.67.3.1 98344 2h0bA 184 28.34 3gf8A 296 28.97 3flcO 518 30.92 2e11A 266 31.56 2e9qA 459 32.80 1ybiA 288 32.83 1wlgA 299 32.88 b.152.1.1 114726 2hfsA 332 33.02 2pz4A 239 33.61 3d7eO 505 34.01 3l5eA 414 35.79 1uypA 432 37.66 b.29.1.19,b.67.2.3 100176,100177 3ef2A 293 38.61 3d3iA 761 40.05 1wuuA 399 41.43 d.14.1.5,d.58.26.7 114900,114901 2jxwA 75 42.35 1nnxA 109 42.54 b.40.10.1 92013 3hmyA 450 42.83 3db5A 151 43.63 1ksiA 642 44.10 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1ntvA 152 44.10 b.55.1.2 86168 3fzyA 234 44.69 3malA 199 45.00 3ibzA 191 45.03 2f0xA 148 45.32 d.38.1.5 132673 2i7fA 108 45.43 3dzwA 109 46.10 1vqoA 240 47.13 b.34.5.3,b.40.4.5 120361,120362 2zpdA 190 47.89 2w1vA 276 48.31 2w40A 503 48.39 3kcmA 154 48.91 3l0qA 554 49.35 2dpfA 115 49.57 2d5fA 493 49.62 2d4wA 504 50.35 2vu9A 444 51.22 2bgzA 299 51.26 2vouA 397 51.66 c.3.1.2,d.16.1.2 153389,153390 2o34A 250 53.16 d.96.2.2 148565 2burA 209 54.36 b.3.6.1 129227 3fx3A 237 54.93 3ezwA 526 55.12 3hkxA 283 55.91 3ld7A 101 56.08 2elaA 175 57.11 1wluA 136 57.43 d.38.1.5 121015 2biwA 490 57.47 1zkiA 133 58.01 d.38.1.5 125199 2hyxA 352 58.13 3lhnA 126 58.19 1f5mA 180 59.00 d.110.2.1 40895 3hd8A 389 59.31 2gbwA 454 59.89 1f89A 291 60.79 d.160.1.1 64988 3gbtA 504 61.32 1j1yA 136 61.46 d.38.1.5 90776 1p4kA 295 62.91 d.153.1.5 87772 3gkeA 349 63.32 1jcfA 344 64.89 c.55.1.1,c.55.1.1 62878,62879 1gqzA 274 65.11 d.21.1.1,d.21.1.1 83311,83312 2ofcA 142 65.43 2w95A 254 65.88 1s14A 194 67.03 d.122.1.2 98329 3ll3A 504 67.99 1uliA 460 68.03 b.33.1.2,d.129.3.3 107921,107922 2cy9A 140 68.83 d.38.1.5 131019 2kppA 114 68.85 1k9vF 201 69.05 c.23.16.1 68365 1bfgA 146 70.30 b.42.1.1 25485 2q2iA 116 71.41 2pimA 141 71.75 2zf5O 497 73.01 2in5A 207 73.13 b.177.1.1 147736 3h46O 506 73.29 3c7fA 487 73.62 3h3zA 235 74.16 2zylA 386 74.17 2h6cA 232 74.30 a.4.5.4,b.82.3.2 147232,147233 3eurA 142 75.31 2fy6A 143 75.71 c.47.1.10 134344 2ifsA 169 75.86 2q3wA 111 76.46 b.33.1.1 139813 3h3nO 506 76.71 2fs2A 151 76.96 d.38.1.5 134003 1juhA 350 77.19 b.82.1.5 71884 3hz6A 511 77.42 2cl2A 298 77.85 3dv8A 220 78.13 2yzyA 200 78.44 1xzoA 174 78.74 c.47.1.10 122474 2bc4A 211 78.89 3fijA 254 79.14 1y7mA 164 79.23 b.160.1.1,d.7.1.1 122696,122697 2ckfA 454 79.52 1knmA 130 82.00 b.42.2.1 72781 3ge2A 130 82.39 3e5xA 250 83.19 1y4wA 518 83.75 b.29.1.19,b.67.2.3 116470,116471 1o7dD 282 84.33 1sh8A 154 84.61 d.38.1.5 105549 1w18A 493 84.67 1bxoA 323 85.53 b.50.1.2 26805 2obtA 327 85.78 1s7jA 262 85.93 d.21.1.2 98647 1jfuA 186 86.06 c.47.1.10 62940 3bbjA 272 86.75 1a9xB 379 87.60 c.8.3.1,c.23.16.1 30732,31409 3e6cC 250 87.70 a.4.5.4,b.82.3.2 158038,158039 3ilfA 268 88.45 1wmvA 54 89.98