# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbiB 354 9.93e-20 1gotB 340 1.40e-19 b.69.4.1 27648 2h14A 317 1.40e-19 2bcjB 340 1.77e-19 b.69.4.1 128289 3emhA 318 1.77e-19 2gnqA 336 2.86e-19 1a0rB 340 3.35e-19 b.69.4.1 27658 1gxrA 337 9.49e-19 b.69.4.1 70722 1nr0A 611 2.29e-18 b.69.4.1,b.69.4.1 86078,86079 2qc5A 300 2.37e-18 1r5mA 425 4.09e-18 3fm0A 345 4.61e-18 2z2nA 299 5.84e-18 3frxA 319 7.80e-18 3fvzA 329 1.23e-17 1k8kC 372 1.30e-17 b.69.4.1 68308 3ei4B 436 1.55e-17 3acpA 417 1.83e-17 1rwiA 270 2.90e-17 b.68.9.1 97987 2qxvA 361 4.05e-17 3dxkC 372 5.02e-17 1pguA 615 7.16e-17 b.69.4.1,b.69.4.1 88069,88070 2aq5A 402 8.22e-17 1ri6A 343 9.70e-17 b.69.11.1 97503 3dwlC 377 1.02e-16 1nexB 464 1.38e-16 a.158.1.1,b.69.4.1 80443,80444 3ei3B 383 1.62e-16 3hrpA 409 1.69e-16 3dw8B 447 1.77e-16 1l0qA 391 1.90e-16 b.1.3.1,b.69.2.3 77644,77645 3k26A 366 2.04e-16 3greA 437 2.68e-16 2dg1A 333 3.13e-16 b.68.6.1 131493 3i2nA 357 3.24e-16 2oajA 902 3.29e-16 2pm7B 297 3.49e-16 3c99A 432 3.88e-16 2ovrB 445 3.93e-16 a.158.1.1,b.69.4.1 145735,145736 1q7fA 286 4.87e-16 b.68.9.1 96036 1yfqA 342 5.55e-16 b.69.4.2 116680 3iiwA 365 5.87e-16 3hfqA 347 6.19e-16 1p22A 435 6.24e-16 a.158.1.1,b.69.4.1 87715,87716 3bwsA 433 7.79e-16 2hesX 330 8.87e-16 3cfsB 414 8.94e-16 1kb0A 677 9.70e-16 a.3.1.6,b.70.1.1 68378,68379 2p4oA 306 1.37e-15 b.68.6.3 149216 3dsmA 328 1.50e-15 2oizA 361 1.92e-15 3gfcA 425 2.47e-15 2qe8A 343 3.22e-15 3li3A 314 3.37e-15 3hxjA 330 3.39e-15 2gc7A 386 3.42e-15 b.69.2.1 134954 3c75H 426 3.62e-15 1pbyB 337 3.70e-15 b.69.2.2 94422 2ad6A 571 4.12e-15 b.70.1.1 126568 3li5A 314 4.83e-15 1pjxA 314 5.87e-15 b.68.6.1 104167 3f3fA 351 6.75e-15 1jmxB 349 6.81e-15 b.69.2.2 66906 2vduB 450 7.43e-15 2oitA 434 8.34e-15 3e5zA 296 9.17e-15 2agyA 361 9.99e-15 1s4uX 407 1.29e-14 b.69.4.1 112027 1yiqA 689 1.46e-14 3li4A 314 1.50e-14 2ojhA 297 1.50e-14 2hqsA 415 1.57e-14 b.68.4.1,c.51.2.1 136662,136663 2ghsA 326 1.63e-14 b.68.6.1 135209 3i1cA 324 2.36e-14 1sq9A 397 2.48e-14 b.69.4.1 105889 2iaaA 390 2.70e-14 2fp8A 322 4.43e-14 2j04B 524 5.23e-14 3kyaA 496 7.25e-14 1kv9A 668 7.26e-14 a.3.1.6,b.70.1.1 73056,73057 1w6sA 599 7.73e-14 b.70.1.1 114284 3dr2A 305 8.05e-14 2w18A 356 8.96e-14 3fgbA 361 9.18e-14 1k32A 1045 1.62e-13 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2d5lA 706 2.74e-13 1xipA 388 4.39e-13 b.69.14.1 115360 1jofA 365 5.30e-13 b.69.10.1 71775 3ei3A 1158 5.85e-13 3c5mA 396 7.56e-13 2be1A 339 8.04e-13 3e0cA 1140 1.05e-12 2hu5A 582 1.57e-12 b.69.7.2,c.69.1.33 136763,136764 1v04A 355 1.84e-12 b.68.6.2 100240 1orvA 728 1.88e-12 b.70.3.1,c.69.1.24 87354,87355 1npeA 267 1.91e-12 b.68.5.1 92032 3g4eA 297 3.07e-12 1cruA 454 1.63e-11 b.68.2.1 27617 2wftA 458 1.81e-11 1yr2A 741 1.89e-11 2gopA 347 2.12e-11 3hacA 728 2.27e-11 2z3zA 706 2.99e-11 1h2wA 710 4.11e-11 b.69.7.1,c.69.1.4 76596,76597 3llpA 493 6.18e-11 2qr5A 582 1.50e-10 b.69.7.2,c.69.1.33 151278,151279 3g0bA 740 2.11e-10 1k3iA 656 2.47e-10 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2bklA 695 8.62e-10 1o6gA 710 2.13e-09 b.69.7.1,c.69.1.4 81087,81088 3dasA 347 3.13e-09 2ismA 352 2.86e-07 2g8sA 353 3.57e-07 2iwaA 266 5.60e-07 2p9wA 334 9.34e-07 3elqA 571 2.74e-06 2wg4B 457 3.20e-06 1zgkA 308 3.50e-06 b.68.11.1 145998 2wg3C 463 4.39e-06 2vpjA 301 4.56e-06 2fluX 308 1.71e-05 b.68.11.1 133750 3ii7A 306 1.74e-05 1x2jA 316 1.85e-05 b.68.11.1 121643 2uvkA 357 2.73e-05 2wozA 318 4.42e-05 3hx6A 570 0.000108 2eceA 462 0.000139 1mdaH 368 0.000227 b.69.2.1 27637 2zwaA 695 0.000256 1h6lA 353 0.000402 b.68.3.1 60687 3hxrA 761 0.000796 3l2oB 312 0.003539 2zuxA 591 0.007004 3gc3B 363 0.007860 3h6jA 438 0.009564 2ebsA 789 0.01061 b.69.13.1,b.69.13.1 146772,146773 2zuyA 620 0.02901 3b7fA 394 0.02918 3h7nA 729 0.02938 1sqjA 789 0.03994 b.69.13.1,b.69.13.1 105918,105919 2v05A 311 0.04090 2b5nA 323 0.09210 3f6kA 685 0.1647 1utcA 363 0.1677 a.118.1.4,b.69.6.1 99914,99915 2jkbA 686 0.1754 2w5nA 367 0.1828 3kciA 389 0.1916 2w20A 471 0.2304 3f7fA 729 0.2827 2sliA 679 0.2839 b.29.1.9,b.68.1.1 24274,27611 2jd4A 383 0.3392 2bibA 547 0.3754 b.109.1.1,d.157.1.8 128581,128582 2iwkA 642 0.4179 1ofzA 312 0.4272 b.68.8.1 86978 2cn3A 737 0.4703 1fwxA 595 0.6216 b.6.1.4,b.69.3.1 60069,60070 1q47A 495 0.6588 b.69.12.1 104532 1shyB 551 0.7543 b.69.12.1,g.16.2.1 105565,105566 1zi0A 307 1.013 2ww5A 468 1.459 2vw2A 697 1.538 1suuA 312 1.970 b.68.10.1 99006 1pz7A 204 2.353 b.29.1.4 95405 2ww8A 893 2.555 3kvcA 533 2.576 3silA 379 2.832 b.68.1.1 27542 3kptA 355 2.918 3cu9A 314 3.001 1wl7A 312 3.931 b.67.2.1 120996 2j04A 588 4.175 3fsnA 533 4.843 1so7A 382 4.854 b.68.1.1 112106 3d61A 314 5.108 2f6eA 127 5.698 3cjyA 259 6.256 2hboA 158 6.378 d.38.1.5 136319 2uzxB 727 7.051 1wp5A 323 7.486 b.68.10.1 114780 1h09A 338 7.724 b.109.1.1,c.1.8.8 83420,83421 2wl1A 191 8.856 2w38A 438 9.477 3kstA 306 10.74 1qu0A 191 11.10 b.29.1.4 24225 2wjsA 608 11.99 3d60A 314 12.87 1c3mA 147 13.05 b.77.3.1 27983 1jtdB 273 13.30 b.69.5.2 67265 2ac1A 541 13.64 3c3vA 510 13.98 3hlkA 446 14.18 3l6vA 370 15.47 3c12A 138 15.62 3k2iA 422 15.74 2ej8A 160 16.03 3d5yA 314 16.64 2pz4A 239 16.78 3lv4A 456 18.90 1gyhA 318 19.13 b.67.2.1 70757 1iwlA 182 19.83 b.125.1.1 83757 1h30A 422 20.70 b.29.1.4,b.29.1.4 76604,76605 2r16A 182 21.38 2cohA 202 22.45 a.4.5.4,b.82.3.2 130677,130678 1yrzA 528 22.63 b.29.1.23,b.67.2.1 123948,123949 2j8gA 339 23.63 b.109.1.1,c.1.8.8 147915,147916 1at0A 145 23.94 b.86.1.1 28374 2hfsA 332 24.18 3flpA 217 24.96 1a9xB 379 24.98 c.8.3.1,c.23.16.1 30732,31409 3kb5A 193 25.05 3d3iA 761 25.48 3hkxA 283 26.40 3gf8A 296 26.88 1w0pA 781 27.31 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2zcwA 202 27.56 1w8oA 601 27.63 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2iwgB 181 27.89 b.29.1.22 145548 3ewkA 227 28.60 1olzA 663 28.88 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2w1vA 276 29.42 1qxmA 300 30.13 b.42.2.1,b.42.2.1 96533,96534 2o62A 270 30.96 b.60.1.9,b.60.1.9 148622,148623 3fz3A 531 31.06 1jcfA 344 31.16 c.55.1.1,c.55.1.1 62878,62879 3c9zA 258 31.56 1jl5A 454 32.98 c.10.2.6 66830 1zvtA 256 33.24 2burA 209 33.32 b.3.6.1 129227 3flcO 518 33.70 1vkdA 338 34.21 b.67.2.4 108644 2h0bA 184 34.44 2e11A 266 34.60 1ksiA 642 34.66 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 3bodA 178 34.74 1xd5A 112 36.48 b.78.1.1 115155 3bk5A 237 36.63 3fijA 254 36.82 2b20A 403 38.85 b.1.18.20,c.69.1.2 127685,127686 2gu1A 361 39.46 2z8rA 591 39.48 2ayhA 214 39.98 b.29.1.2 24172 1wuuA 399 40.91 d.14.1.5,d.58.26.7 114900,114901 3kcmA 154 42.40 2o34A 250 42.77 d.96.2.2 148565 1f89A 291 43.27 d.160.1.1 64988 2f0xA 148 46.54 d.38.1.5 132673 3d7eO 505 48.54 2cy9A 140 48.55 d.38.1.5 131019 1k9vF 201 49.82 c.23.16.1 68365 3a0eA 110 50.41 3fzyA 234 50.55 2i7fA 108 52.58 2jxwA 75 53.18 2q2iA 116 53.46 2yzhA 171 54.12 3db5A 151 54.54 2vouA 397 55.86 c.3.1.2,d.16.1.2 153389,153390 3g48A 112 56.06 2f9sA 151 56.56 c.47.1.10 133168 2pimA 141 58.20 3hd8A 389 58.65 3gbtA 504 59.17 1uv4A 293 59.21 b.67.2.1 119705 1nnxA 109 59.88 b.40.10.1 92013 2nzhA 113 61.80 1zkiA 133 62.02 d.38.1.5 125199 2cl2A 298 62.04 2biwA 490 62.06 2aukA 190 64.38 3cpnA 330 64.55 2v9tB 220 64.67 2w40A 503 64.81 1s1dA 331 66.30 b.67.3.1 98344 3h46O 506 66.56 3fx3A 237 67.18 2zylA 386 67.43 3ezwA 526 67.51 2z7xB 520 69.48 3c2uA 538 69.56 1bqbA 301 70.45 d.92.1.2 58962 1xzoA 174 70.84 c.47.1.10 122474 2zf5O 497 70.93 1ixlA 131 71.35 d.38.1.5 90717 3l5eA 414 71.43 1p9aG 290 73.03 c.10.2.7 87990 1f5mA 180 73.20 d.110.2.1 40895 3h3nO 506 74.25 1ntvA 152 74.30 b.55.1.2 86168 1w18A 493 74.39 3l0qA 554 75.78 3foaA 510 76.14 2d4wA 504 77.30 1jfuA 186 77.33 c.47.1.10 62940 1vqoA 240 78.30 b.34.5.3,b.40.4.5 120361,120362 3dohA 380 78.88 3ld7A 101 80.39 2bf6A 449 80.61 2h4uA 145 80.70 d.38.1.5 136082 2hyxA 352 84.00 2fy6A 143 84.36 c.47.1.10 134344 2gbwA 454 85.56 1kj1D 109 86.00 b.78.1.1 68639 2kppA 114 86.39 1v9wA 130 86.88 c.47.1.16 108453 1s7jA 262 87.03 d.21.1.2 98647 3a1jC 263 88.11 1sh8A 154 88.15 d.38.1.5 105549 3eurA 142 88.29 3hmyA 450 88.84 1q98A 165 89.33 c.47.1.10 96253