# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h14A 317 2.14e-18 3emhA 318 2.31e-18 2pbiB 354 2.64e-18 1gotB 340 3.10e-18 b.69.4.1 27648 2gnqA 336 3.13e-18 2bcjB 340 5.00e-18 b.69.4.1 128289 1a0rB 340 6.29e-18 b.69.4.1 27658 1gxrA 337 1.72e-17 b.69.4.1 70722 2qc5A 300 2.51e-17 1nr0A 611 3.24e-17 b.69.4.1,b.69.4.1 86078,86079 2z2nA 299 4.16e-17 1r5mA 425 4.75e-17 3frxA 319 6.78e-17 3fm0A 345 7.83e-17 3fvzA 329 1.67e-16 1rwiA 270 2.23e-16 b.68.9.1 97987 1k8kC 372 2.71e-16 b.69.4.1 68308 3acpA 417 4.54e-16 3dxkC 372 7.89e-16 3ei4B 436 8.19e-16 1pguA 615 8.80e-16 b.69.4.1,b.69.4.1 88069,88070 2qxvA 361 8.99e-16 1l0qA 391 9.14e-16 b.1.3.1,b.69.2.3 77644,77645 1ri6A 343 1.18e-15 b.69.11.1 97503 1q7fA 286 1.83e-15 b.68.9.1 96036 2dg1A 333 1.86e-15 b.68.6.1 131493 3hrpA 409 1.95e-15 1nexB 464 2.28e-15 a.158.1.1,b.69.4.1 80443,80444 2aq5A 402 2.39e-15 3dwlC 377 2.50e-15 3k26A 366 2.59e-15 3ei3B 383 2.62e-15 3greA 437 3.71e-15 3dw8B 447 4.01e-15 3i2nA 357 4.37e-15 2ovrB 445 4.43e-15 a.158.1.1,b.69.4.1 145735,145736 3bwsA 433 4.78e-15 2oajA 902 4.80e-15 3hxjA 330 6.19e-15 3iiwA 365 6.39e-15 2pm7B 297 6.95e-15 3hfqA 347 8.02e-15 3dsmA 328 1.01e-14 3c99A 432 1.01e-14 1kb0A 677 1.03e-14 a.3.1.6,b.70.1.1 68378,68379 3li3A 314 1.18e-14 2p4oA 306 1.26e-14 b.68.6.3 149216 3cfsB 414 1.33e-14 1yfqA 342 1.44e-14 b.69.4.2 116680 2hesX 330 1.51e-14 1p22A 435 1.79e-14 a.158.1.1,b.69.4.1 87715,87716 2oizA 361 1.85e-14 1pbyB 337 2.14e-14 b.69.2.2 94422 3li5A 314 2.18e-14 2qe8A 343 2.34e-14 2gc7A 386 2.60e-14 b.69.2.1 134954 3c75H 426 2.60e-14 1pjxA 314 2.98e-14 b.68.6.1 104167 3gfcA 425 3.46e-14 2ad6A 571 3.95e-14 b.70.1.1 126568 3e5zA 296 4.28e-14 1jmxB 349 4.33e-14 b.69.2.2 66906 2ojhA 297 4.70e-14 3i1cA 324 6.46e-14 3li4A 314 6.61e-14 3f3fA 351 6.72e-14 2agyA 361 7.16e-14 2ghsA 326 7.62e-14 b.68.6.1 135209 2hqsA 415 8.11e-14 b.68.4.1,c.51.2.1 136662,136663 2oitA 434 8.65e-14 2vduB 450 1.08e-13 1s4uX 407 1.32e-13 b.69.4.1 112027 2iaaA 390 1.34e-13 1sq9A 397 1.50e-13 b.69.4.1 105889 1yiqA 689 2.51e-13 3dr2A 305 3.11e-13 2fp8A 322 3.12e-13 1w6sA 599 3.73e-13 b.70.1.1 114284 1kv9A 668 4.83e-13 a.3.1.6,b.70.1.1 73056,73057 3fgbA 361 5.03e-13 2w18A 356 5.09e-13 2j04B 524 5.78e-13 3kyaA 496 6.84e-13 1k32A 1045 1.55e-12 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1jofA 365 1.99e-12 b.69.10.1 71775 2d5lA 706 2.31e-12 3c5mA 396 2.59e-12 2be1A 339 3.12e-12 3g4eA 297 4.93e-12 1xipA 388 5.37e-12 b.69.14.1 115360 1v04A 355 7.78e-12 b.68.6.2 100240 1npeA 267 9.04e-12 b.68.5.1 92032 3ei3A 1158 1.05e-11 2hu5A 582 1.33e-11 b.69.7.2,c.69.1.33 136763,136764 3e0cA 1140 1.90e-11 1orvA 728 2.81e-11 b.70.3.1,c.69.1.24 87354,87355 2gopA 347 6.54e-11 1cruA 454 6.79e-11 b.68.2.1 27617 2wftA 458 1.41e-10 3hacA 728 1.69e-10 3llpA 493 2.12e-10 1yr2A 741 2.13e-10 1h2wA 710 2.15e-10 b.69.7.1,c.69.1.4 76596,76597 2z3zA 706 2.42e-10 1k3iA 656 3.61e-10 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2qr5A 582 4.62e-10 b.69.7.2,c.69.1.33 151278,151279 3g0bA 740 1.19e-09 2bklA 695 4.22e-09 1o6gA 710 8.67e-09 b.69.7.1,c.69.1.4 81087,81088 3dasA 347 9.24e-09 2ismA 352 3.09e-07 2iwaA 266 5.83e-07 2g8sA 353 1.01e-06 2p9wA 334 1.11e-06 3elqA 571 1.88e-06 1zgkA 308 2.18e-06 b.68.11.1 145998 2vpjA 301 3.95e-06 2wg4B 457 4.29e-06 2fluX 308 6.31e-06 b.68.11.1 133750 1x2jA 316 9.94e-06 b.68.11.1 121643 2wg3C 463 1.34e-05 3ii7A 306 1.47e-05 2uvkA 357 3.73e-05 2wozA 318 4.23e-05 1mdaH 368 0.000133 b.69.2.1 27637 3hx6A 570 0.000159 2eceA 462 0.000281 1h6lA 353 0.000434 b.68.3.1 60687 2zwaA 695 0.000506 3hxrA 761 0.002424 2zuxA 591 0.002695 3l2oB 312 0.007774 3gc3B 363 0.008346 2ebsA 789 0.009054 b.69.13.1,b.69.13.1 146772,146773 3h6jA 438 0.00996 2zuyA 620 0.01038 1sqjA 789 0.02188 b.69.13.1,b.69.13.1 105918,105919 3b7fA 394 0.02980 2v05A 311 0.03267 2b5nA 323 0.05414 3f6kA 685 0.06484 3h7nA 729 0.1054 2w20A 471 0.1270 1utcA 363 0.1430 a.118.1.4,b.69.6.1 99914,99915 2sliA 679 0.1568 b.29.1.9,b.68.1.1 24274,27611 2jkbA 686 0.1906 2w5nA 367 0.1983 2bibA 547 0.2134 b.109.1.1,d.157.1.8 128581,128582 2cn3A 737 0.2172 1fwxA 595 0.2495 b.6.1.4,b.69.3.1 60069,60070 3kciA 389 0.2542 2iwkA 642 0.2775 1q47A 495 0.3552 b.69.12.1 104532 2jd4A 383 0.3799 1ofzA 312 0.4178 b.68.8.1 86978 2ww5A 468 0.4733 3silA 379 0.8082 b.68.1.1 27542 1shyB 551 0.9243 b.69.12.1,g.16.2.1 105565,105566 2vw2A 697 0.9314 1zi0A 307 1.061 3f7fA 729 1.226 1jtdB 273 1.658 b.69.5.2 67265 3kvcA 533 1.698 3cu9A 314 1.819 1suuA 312 2.338 b.68.10.1 99006 3fsnA 533 2.543 1pz7A 204 2.596 b.29.1.4 95405 1wl7A 312 2.979 b.67.2.1 120996 1so7A 382 3.066 b.68.1.1 112106 3d61A 314 3.792 2ww8A 893 3.929 2w38A 438 3.937 3c12A 138 4.291 2f6eA 127 4.308 3kptA 355 4.313 2ac1A 541 4.706 2wl1A 191 4.836 1yrzA 528 5.280 b.29.1.23,b.67.2.1 123948,123949 3c3vA 510 5.516 2j04A 588 5.546 3d5yA 314 6.537 3d60A 314 7.139 2uzxB 727 7.170 3kstA 306 8.032 3cjyA 259 8.220 1w8oA 601 8.437 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2z8rA 591 8.960 3lv4A 456 9.681 1wp5A 323 9.831 b.68.10.1 114780 1qu0A 191 9.892 b.29.1.4 24225 2hboA 158 10.64 d.38.1.5 136319 2bf6A 449 11.29 2j8gA 339 11.61 b.109.1.1,c.1.8.8 147915,147916 1gqzA 274 11.83 d.21.1.1,d.21.1.1 83311,83312 3fz3A 531 11.90 3l6vA 370 12.06 3a0eA 110 12.09 2pz4A 239 12.19 1olzA 663 12.53 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2gu1A 361 12.91 2wjsA 608 12.99 3kb5A 193 13.20 1h09A 338 13.27 b.109.1.1,c.1.8.8 83420,83421 3c2uA 538 13.38 1iwlA 182 14.12 b.125.1.1 83757 1gyhA 318 14.96 b.67.2.1 70757 2ej8A 160 14.99 1c3mA 147 15.39 b.77.3.1 27983 2o62A 270 17.12 b.60.1.9,b.60.1.9 148622,148623 2cohA 202 17.49 a.4.5.4,b.82.3.2 130677,130678 1vkdA 338 18.01 b.67.2.4 108644 2aukA 190 18.27 3flpA 217 18.61 2r16A 182 18.77 3hkxA 283 18.87 1xd5A 112 18.93 b.78.1.1 115155 1kj1D 109 18.97 b.78.1.1 68639 3k2iA 422 19.48 1qxmA 300 20.18 b.42.2.1,b.42.2.1 96533,96534 2zcwA 202 20.83 3hlkA 446 21.30 2iwgB 181 21.40 b.29.1.22 145548 3cpnA 330 21.65 2hfsA 332 21.93 2ayhA 214 22.01 b.29.1.2 24172 1wlgA 299 22.22 b.152.1.1 114726 3c9zA 258 22.24 2w1vA 276 22.96 3fzyA 234 23.10 2e11A 266 23.93 2jxwA 75 24.16 3ewkA 227 24.94 3kcmA 154 26.57 3fosA 214 27.25 3db5A 151 27.37 2gkeA 274 28.81 d.21.1.1,d.21.1.1 135329,135330 1f89A 291 29.11 d.160.1.1 64988 3d7eO 505 30.32 1h30A 422 30.43 b.29.1.4,b.29.1.4 76604,76605 3flcO 518 30.77 1ntvA 152 31.43 b.55.1.2 86168 3hd8A 389 32.64 1at0A 145 32.64 b.86.1.1 28374 1uv4A 293 33.71 b.67.2.1 119705 3bodA 178 33.98 1jpcA 109 34.82 b.78.1.1 27986 3ef2A 293 36.21 3l0qA 554 36.89 2w40A 503 37.35 2fy6A 143 37.85 c.47.1.10 134344 3gbtA 504 38.60 2i7fA 108 38.99 1xksA 450 39.62 b.69.14.1 115422 3ezwA 526 39.85 2f9sA 151 41.45 c.47.1.10 133168 1w0pA 781 42.19 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2bgzA 299 43.26 3h46O 506 44.23 3ah2A 288 44.38 1uypA 432 44.53 b.29.1.19,b.67.2.3 100176,100177 2h0bA 184 44.96 2o34A 250 45.41 d.96.2.2 148565 1zvtA 256 46.46 2d4wA 504 46.49 1twuA 139 47.25 d.32.1.8 107413 3h3nO 506 50.39 1s1dA 331 50.52 b.67.3.1 98344 3malA 199 50.83 1f5mA 180 51.55 d.110.2.1 40895 2e9qA 459 52.11 1y7mA 164 52.31 b.160.1.1,d.7.1.1 122696,122697 2pimA 141 52.65 1nnxA 109 54.24 b.40.10.1 92013 3gf8A 296 54.65 2vouA 397 54.73 c.3.1.2,d.16.1.2 153389,153390 3hz6A 511 54.91 2b20A 403 55.04 b.1.18.20,c.69.1.2 127685,127686 2hyxA 352 57.87 1jfuA 186 58.04 c.47.1.10 62940 3lhnA 126 58.08 3c7fA 487 58.14 2zylA 386 58.48 1vqoA 240 58.95 b.34.5.3,b.40.4.5 120361,120362 2d5fA 493 59.72 1w18A 493 60.00 1jcfA 344 60.43 c.55.1.1,c.55.1.1 62878,62879 3ll3A 504 60.53 2gf3A 389 62.06 c.3.1.2,d.16.1.3 135070,135071 3bk5A 237 63.63 2zpdA 190 64.51 2zf5O 497 66.56 2kppA 114 67.02 3ibzA 191 67.03 1uf5A 303 67.28 d.160.1.2 107808 1ksiA 642 70.45 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2q3wA 111 70.63 b.33.1.1 139813 1sh8A 154 70.70 d.38.1.5 105549 1a9xB 379 70.85 c.8.3.1,c.23.16.1 30732,31409 1p4kA 295 72.54 d.153.1.5 87772 1y4wA 518 73.27 b.29.1.19,b.67.2.3 116470,116471 3b3qE 197 73.88 b.29.1.4 154813 3fijA 254 73.90 2dpfA 115 74.20 2q4nA 166 74.21 b.60.1.8 139871 3ld7A 101 74.24 1o6wA 75 74.42 b.72.1.1,b.72.1.1 81103,81104 3gkeA 349 74.84 2burA 209 75.03 b.3.6.1 129227 3dzwA 109 75.04 1xzoA 174 75.78 c.47.1.10 122474 1r59O 505 79.23 c.55.1.4,c.55.1.4 111697,111698 2jmzA 186 79.45 1o7dD 282 80.09 2vqaA 361 81.03 2yzhA 171 81.21 1knmA 130 82.65 b.42.2.1 72781 1bqbA 301 83.52 d.92.1.2 58962 1xhbA 472 83.87 b.42.2.1,c.68.1.17 115290,115291 2k7pA 188 84.07 3gg4A 554 84.33 1wuuA 399 84.96 d.14.1.5,d.58.26.7 114900,114901 2f0xA 148 85.31 d.38.1.5 132673 3eurA 142 85.34 3d3iA 761 85.45 1wmvA 54 85.45 1z02A 446 87.21 8tlnE 316 87.44 d.92.1.2 59075 3g48A 112 88.13 1st9A 143 88.23 c.47.1.10 98987 1yllA 200 88.59 b.82.1.17 123653 2q2iA 116 89.44