# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbiB 354 7.71e-18 2h14A 317 7.85e-18 3emhA 318 8.47e-18 1gotB 340 8.52e-18 b.69.4.1 27648 2bcjB 340 1.04e-17 b.69.4.1 128289 2gnqA 336 1.32e-17 1a0rB 340 1.65e-17 b.69.4.1 27658 1gxrA 337 4.60e-17 b.69.4.1 70722 1nr0A 611 6.80e-17 b.69.4.1,b.69.4.1 86078,86079 2qc5A 300 8.92e-17 2z2nA 299 1.53e-16 1r5mA 425 1.93e-16 3frxA 319 2.28e-16 3fvzA 329 2.70e-16 3fm0A 345 2.71e-16 1rwiA 270 5.41e-16 b.68.9.1 97987 3acpA 417 6.82e-16 1k8kC 372 7.54e-16 b.69.4.1 68308 3ei4B 436 1.27e-15 2qxvA 361 1.39e-15 1pguA 615 1.80e-15 b.69.4.1,b.69.4.1 88069,88070 1l0qA 391 1.86e-15 b.1.3.1,b.69.2.3 77644,77645 3dxkC 372 2.19e-15 1ri6A 343 3.17e-15 b.69.11.1 97503 3dwlC 377 3.58e-15 2dg1A 333 4.12e-15 b.68.6.1 131493 3hrpA 409 4.36e-15 1nexB 464 4.39e-15 a.158.1.1,b.69.4.1 80443,80444 1q7fA 286 4.47e-15 b.68.9.1 96036 2aq5A 402 4.88e-15 3ei3B 383 5.58e-15 3k26A 366 6.20e-15 2oajA 902 8.06e-15 3greA 437 8.13e-15 3i2nA 357 8.23e-15 2ovrB 445 8.79e-15 a.158.1.1,b.69.4.1 145735,145736 3dw8B 447 9.63e-15 3bwsA 433 1.18e-14 2pm7B 297 1.19e-14 3hfqA 347 1.61e-14 3iiwA 365 1.62e-14 1p22A 435 1.83e-14 a.158.1.1,b.69.4.1 87715,87716 1kb0A 677 1.88e-14 a.3.1.6,b.70.1.1 68378,68379 3dsmA 328 2.09e-14 3c99A 432 2.31e-14 1yfqA 342 2.62e-14 b.69.4.2 116680 2hesX 330 2.74e-14 2p4oA 306 2.74e-14 b.68.6.3 149216 3cfsB 414 3.16e-14 3li3A 314 3.32e-14 2oizA 361 3.39e-14 2qe8A 343 3.72e-14 3hxjA 330 3.96e-14 1pbyB 337 4.64e-14 b.69.2.2 94422 3li5A 314 5.04e-14 2gc7A 386 5.26e-14 b.69.2.1 134954 2ad6A 571 6.48e-14 b.70.1.1 126568 1pjxA 314 6.50e-14 b.68.6.1 104167 3c75H 426 7.86e-14 3gfcA 425 8.25e-14 3e5zA 296 9.15e-14 1jmxB 349 1.00e-13 b.69.2.2 66906 2oitA 434 1.19e-13 3li4A 314 1.31e-13 2agyA 361 1.36e-13 2ojhA 297 1.50e-13 2ghsA 326 1.75e-13 b.68.6.1 135209 2vduB 450 1.78e-13 3i1cA 324 1.78e-13 1s4uX 407 1.99e-13 b.69.4.1 112027 3f3fA 351 2.13e-13 2iaaA 390 2.21e-13 2hqsA 415 2.92e-13 b.68.4.1,c.51.2.1 136662,136663 1sq9A 397 3.39e-13 b.69.4.1 105889 2fp8A 322 4.15e-13 1yiqA 689 4.29e-13 3dr2A 305 5.33e-13 1w6sA 599 7.76e-13 b.70.1.1 114284 1kv9A 668 8.44e-13 a.3.1.6,b.70.1.1 73056,73057 2w18A 356 9.65e-13 2j04B 524 1.04e-12 3fgbA 361 1.08e-12 3kyaA 496 1.90e-12 1k32A 1045 2.28e-12 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1jofA 365 4.53e-12 b.69.10.1 71775 2d5lA 706 4.56e-12 3c5mA 396 5.09e-12 2be1A 339 5.55e-12 1xipA 388 9.10e-12 b.69.14.1 115360 3g4eA 297 9.88e-12 1v04A 355 1.05e-11 b.68.6.2 100240 1npeA 267 1.08e-11 b.68.5.1 92032 3ei3A 1158 1.38e-11 2hu5A 582 1.69e-11 b.69.7.2,c.69.1.33 136763,136764 3e0cA 1140 2.21e-11 1orvA 728 2.93e-11 b.70.3.1,c.69.1.24 87354,87355 1cruA 454 9.11e-11 b.68.2.1 27617 2wftA 458 1.49e-10 2gopA 347 1.82e-10 1yr2A 741 1.82e-10 1h2wA 710 2.56e-10 b.69.7.1,c.69.1.4 76596,76597 3hacA 728 2.64e-10 2z3zA 706 3.09e-10 3llpA 493 3.83e-10 2qr5A 582 7.80e-10 b.69.7.2,c.69.1.33 151278,151279 1k3iA 656 9.52e-10 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3g0bA 740 1.41e-09 2bklA 695 4.63e-09 3dasA 347 6.82e-09 1o6gA 710 1.47e-08 b.69.7.1,c.69.1.4 81087,81088 2ismA 352 3.25e-07 2iwaA 266 5.41e-07 2g8sA 353 9.00e-07 2p9wA 334 2.33e-06 1zgkA 308 2.43e-06 b.68.11.1 145998 3elqA 571 2.98e-06 2vpjA 301 4.41e-06 2wg4B 457 4.87e-06 2fluX 308 7.83e-06 b.68.11.1 133750 1x2jA 316 9.73e-06 b.68.11.1 121643 3ii7A 306 1.06e-05 2wg3C 463 1.73e-05 2wozA 318 3.77e-05 2uvkA 357 4.40e-05 3hx6A 570 0.000134 1mdaH 368 0.000140 b.69.2.1 27637 2eceA 462 0.000205 2zwaA 695 0.000455 1h6lA 353 0.000528 b.68.3.1 60687 3hxrA 761 0.001318 2zuxA 591 0.002676 3gc3B 363 0.005690 3l2oB 312 0.006025 3h6jA 438 0.007582 2zuyA 620 0.01293 2ebsA 789 0.01518 b.69.13.1,b.69.13.1 146772,146773 1sqjA 789 0.01906 b.69.13.1,b.69.13.1 105918,105919 2v05A 311 0.02723 2b5nA 323 0.02849 3b7fA 394 0.03541 3h7nA 729 0.03916 3f6kA 685 0.06948 1utcA 363 0.08697 a.118.1.4,b.69.6.1 99914,99915 2jkbA 686 0.1355 2sliA 679 0.1470 b.29.1.9,b.68.1.1 24274,27611 2bibA 547 0.1519 b.109.1.1,d.157.1.8 128581,128582 1ofzA 312 0.1679 b.68.8.1 86978 1fwxA 595 0.2141 b.6.1.4,b.69.3.1 60069,60070 2jd4A 383 0.2646 2w5nA 367 0.2677 2iwkA 642 0.2832 2w20A 471 0.3200 3f7fA 729 0.4213 2cn3A 737 0.4498 3kciA 389 0.4516 2vw2A 697 0.4655 2ww5A 468 0.5601 1shyB 551 0.7434 b.69.12.1,g.16.2.1 105565,105566 1zi0A 307 0.8262 3silA 379 0.8883 b.68.1.1 27542 1q47A 495 0.9344 b.69.12.1 104532 3cu9A 314 1.586 3kvcA 533 1.587 1wl7A 312 1.802 b.67.2.1 120996 1pz7A 204 1.942 b.29.1.4 95405 1suuA 312 2.160 b.68.10.1 99006 3fsnA 533 2.790 3kptA 355 3.010 3d61A 314 3.176 1so7A 382 3.372 b.68.1.1 112106 2w38A 438 3.509 3kstA 306 3.698 1yrzA 528 3.808 b.29.1.23,b.67.2.1 123948,123949 2ww8A 893 3.997 2f6eA 127 4.021 3c3vA 510 4.063 3d60A 314 4.661 3d5yA 314 4.691 1h09A 338 5.251 b.109.1.1,c.1.8.8 83420,83421 1jtdB 273 6.174 b.69.5.2 67265 2z8rA 591 6.188 2hboA 158 6.491 d.38.1.5 136319 2uzxB 727 6.713 3c12A 138 6.735 2j04A 588 6.817 1qu0A 191 7.164 b.29.1.4 24225 2wl1A 191 7.398 3lv4A 456 7.426 3cjyA 259 7.675 3fz3A 531 8.740 2r16A 182 9.454 2j8gA 339 10.99 b.109.1.1,c.1.8.8 147915,147916 1gyhA 318 11.67 b.67.2.1 70757 1c3mA 147 11.75 b.77.3.1 27983 2wjsA 608 12.27 2pz4A 239 12.52 3l6vA 370 12.56 2o62A 270 12.96 b.60.1.9,b.60.1.9 148622,148623 1xd5A 112 13.31 b.78.1.1 115155 2ac1A 541 13.49 2ej8A 160 14.23 1w8oA 601 14.29 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1iwlA 182 14.61 b.125.1.1 83757 1wp5A 323 14.69 b.68.10.1 114780 3c2uA 538 15.76 1olzA 663 15.96 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2aukA 190 16.89 2bf6A 449 17.59 2w1vA 276 17.89 3a0eA 110 17.97 3cpnA 330 18.36 3flpA 217 18.39 2cohA 202 18.78 a.4.5.4,b.82.3.2 130677,130678 1gqzA 274 20.38 d.21.1.1,d.21.1.1 83311,83312 2e11A 266 21.19 2jxwA 75 21.53 3hkxA 283 21.66 2zcwA 202 22.82 3fzyA 234 23.27 3db5A 151 23.80 3kb5A 193 23.85 3k2iA 422 24.23 3bodA 178 24.45 1h30A 422 24.49 b.29.1.4,b.29.1.4 76604,76605 3ewkA 227 24.75 3c9zA 258 25.26 3hd8A 389 26.52 2gu1A 361 27.43 2h0bA 184 27.70 3flcO 518 28.80 1kj1D 109 28.84 b.78.1.1 68639 3hlkA 446 28.85 1vkdA 338 30.05 b.67.2.4 108644 1f89A 291 30.33 d.160.1.1 64988 2iwgB 181 30.35 b.29.1.22 145548 3d7eO 505 32.24 1zvtA 256 32.31 2hfsA 332 33.78 2ayhA 214 35.44 b.29.1.2 24172 3kcmA 154 35.65 2w40A 503 36.58 1jpcA 109 37.16 b.78.1.1 27986 2i7fA 108 37.33 3gbtA 504 37.91 3gf8A 296 38.33 2d5fA 493 39.21 1ksiA 642 41.07 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 3bk5A 237 41.37 2biwA 490 41.64 1at0A 145 41.90 b.86.1.1 28374 1uv4A 293 42.29 b.67.2.1 119705 1nnxA 109 42.33 b.40.10.1 92013 1f5mA 180 43.29 d.110.2.1 40895 2vouA 397 44.82 c.3.1.2,d.16.1.2 153389,153390 2e9qA 459 45.17 2gkeA 274 45.33 d.21.1.1,d.21.1.1 135329,135330 2uxtA 451 46.42 2f0xA 148 48.04 d.38.1.5 132673 1qxmA 300 48.51 b.42.2.1,b.42.2.1 96533,96534 1s1dA 331 48.61 b.67.3.1 98344 3l0qA 554 48.82 3h46O 506 49.37 1wlgA 299 49.65 b.152.1.1 114726 3ezwA 526 49.88 2cl2A 298 50.58 2d4wA 504 51.00 3fosA 214 51.53 2fy6A 143 51.72 c.47.1.10 134344 2zpdA 190 51.79 2zf5O 497 52.89 3h3nO 506 53.31 1p4kA 295 53.46 d.153.1.5 87772 3c7fA 487 53.47 2pimA 141 55.44 2o34A 250 56.17 d.96.2.2 148565 2kppA 114 56.58 3ll3A 504 57.12 3gkeA 349 57.41 3g48A 112 57.56 1jcfA 344 57.62 c.55.1.1,c.55.1.1 62878,62879 3ld7A 101 57.98 1s7jA 262 58.50 d.21.1.2 98647 1r59O 505 58.99 c.55.1.4,c.55.1.4 111697,111698 1xksA 450 59.86 b.69.14.1 115422 1w0pA 781 60.39 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3ibzA 191 60.49 1j58A 385 60.70 b.82.1.2 71531 1zkiA 133 60.87 d.38.1.5 125199 2hyxA 352 61.59 2zylA 386 61.86 1vqoA 240 62.14 b.34.5.3,b.40.4.5 120361,120362 2jmzA 186 62.20 2burA 209 62.89 b.3.6.1 129227 3l5eA 414 63.51 1ntvA 152 64.80 b.55.1.2 86168 3ef2A 293 64.97 2q3wA 111 65.27 b.33.1.1 139813 2f9sA 151 65.38 c.47.1.10 133168 2in5A 207 66.65 b.177.1.1 147736 2dpfA 115 66.87 3d3iA 761 67.10 2b20A 403 67.19 b.1.18.20,c.69.1.2 127685,127686 3dzwA 109 68.26 1xzoA 174 69.26 c.47.1.10 122474 3hz6A 511 69.31 3b3qE 197 69.46 b.29.1.4 154813 3fx3A 237 70.68 1y7mA 164 71.89 b.160.1.1,d.7.1.1 122696,122697 3ihxA 152 73.06 1yllA 200 73.21 b.82.1.17 123653 1p9aG 290 76.50 c.10.2.7 87990 2nzhA 113 76.52 2e4qA 109 76.82 2q2iA 116 78.21 1uypA 432 79.78 b.29.1.19,b.67.2.3 100176,100177 3hmyA 450 80.45 1z02A 446 80.82 1op4A 159 81.39 b.1.6.1 93397 1jfuA 186 83.24 c.47.1.10 62940 1a9xB 379 84.67 c.8.3.1,c.23.16.1 30732,31409 2k7pA 188 84.98 3lhnA 126 85.33 1k9vF 201 85.43 c.23.16.1 68365 2gbwA 454 86.37 2vqaA 361 86.49 2ggtA 164 86.54 c.47.1.10 135156 2h6cA 232 86.61 a.4.5.4,b.82.3.2 147232,147233 1jl5A 454 86.78 c.10.2.6 66830 3bbjA 272 87.35 2bgzA 299 87.41 3malA 199 87.91 2h4uA 145 88.22 d.38.1.5 136082 3i57A 185 88.40 1w5dA 462 88.71 e.3.1.3 120642 3lklA 98 88.93 1juhA 350 89.65 b.82.1.5 71884 1wluA 136 89.80 d.38.1.5 121015