# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bcjB 340 4.43e-22 b.69.4.1 128289 2z2nA 299 6.57e-22 2pbiB 354 8.03e-22 1gotB 340 8.84e-22 b.69.4.1 27648 2h14A 317 9.80e-22 2qc5A 300 1.18e-21 1a0rB 340 1.61e-21 b.69.4.1 27658 3emhA 318 1.64e-21 2gnqA 336 1.93e-21 1r5mA 425 7.86e-21 1nr0A 611 1.05e-20 b.69.4.1,b.69.4.1 86078,86079 3fm0A 345 1.14e-20 1gxrA 337 1.17e-20 b.69.4.1 70722 3frxA 319 3.09e-20 1k8kC 372 7.34e-20 b.69.4.1 68308 1rwiA 270 9.08e-20 b.68.9.1 97987 3ei4B 436 1.18e-19 3hfqA 347 1.33e-19 1ri6A 343 1.38e-19 b.69.11.1 97503 1pguA 615 1.52e-19 b.69.4.1,b.69.4.1 88069,88070 1q7fA 286 1.63e-19 b.68.9.1 96036 3fvzA 329 2.35e-19 3dxkC 372 2.76e-19 3hrpA 409 3.19e-19 3ei3B 383 5.30e-19 3acpA 417 5.32e-19 2qxvA 361 5.50e-19 1l0qA 391 8.45e-19 b.1.3.1,b.69.2.3 77644,77645 3dwlC 377 1.17e-18 2aq5A 402 1.31e-18 3i2nA 357 1.34e-18 2dg1A 333 1.36e-18 b.68.6.1 131493 2p4oA 306 1.58e-18 b.68.6.3 149216 3k26A 366 1.60e-18 1nexB 464 2.33e-18 a.158.1.1,b.69.4.1 80443,80444 3bwsA 433 2.52e-18 3c99A 432 2.79e-18 2hesX 330 3.31e-18 1yfqA 342 4.34e-18 b.69.4.2 116680 3iiwA 365 4.42e-18 1pjxA 314 5.91e-18 b.68.6.1 104167 3cfsB 414 5.93e-18 2pm7B 297 6.52e-18 3greA 437 6.91e-18 2ovrB 445 8.35e-18 a.158.1.1,b.69.4.1 145735,145736 3li3A 314 8.89e-18 3gfcA 425 9.70e-18 3dw8B 447 1.08e-17 1pbyB 337 1.10e-17 b.69.2.2 94422 3hxjA 330 1.56e-17 1p22A 435 1.62e-17 a.158.1.1,b.69.4.1 87715,87716 3li5A 314 1.64e-17 3dsmA 328 1.91e-17 2oizA 361 2.33e-17 3i1cA 324 2.61e-17 2gc7A 386 3.65e-17 b.69.2.1 134954 3f3fA 351 3.72e-17 3li4A 314 4.55e-17 2ghsA 326 5.05e-17 b.68.6.1 135209 3e5zA 296 5.31e-17 3fgbA 361 5.61e-17 3c75H 426 6.45e-17 2qe8A 343 7.55e-17 2oajA 902 9.05e-17 1jmxB 349 1.05e-16 b.69.2.2 66906 1sq9A 397 1.27e-16 b.69.4.1 105889 2vduB 450 1.75e-16 1jofA 365 1.80e-16 b.69.10.1 71775 1s4uX 407 1.82e-16 b.69.4.1 112027 2agyA 361 2.22e-16 3dr2A 305 5.16e-16 2ojhA 297 6.17e-16 2w18A 356 1.06e-15 2iaaA 390 1.12e-15 1k32A 1045 1.21e-15 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2oitA 434 1.32e-15 1kb0A 677 2.43e-15 a.3.1.6,b.70.1.1 68378,68379 2ad6A 571 2.73e-15 b.70.1.1 126568 3g4eA 297 2.79e-15 2hqsA 415 5.17e-15 b.68.4.1,c.51.2.1 136662,136663 3c5mA 396 5.20e-15 1npeA 267 5.59e-15 b.68.5.1 92032 2fp8A 322 5.66e-15 2j04B 524 7.04e-15 3kyaA 496 9.07e-15 3e0cA 1140 1.08e-14 3ei3A 1158 1.26e-14 1w6sA 599 1.46e-14 b.70.1.1 114284 1v04A 355 1.81e-14 b.68.6.2 100240 2d5lA 706 3.00e-14 2hu5A 582 3.72e-14 b.69.7.2,c.69.1.33 136763,136764 1yiqA 689 1.47e-13 1orvA 728 1.48e-13 b.70.3.1,c.69.1.24 87354,87355 1kv9A 668 1.76e-13 a.3.1.6,b.70.1.1 73056,73057 1cruA 454 4.76e-13 b.68.2.1 27617 1h2wA 710 5.47e-13 b.69.7.1,c.69.1.4 76596,76597 1xipA 388 6.01e-13 b.69.14.1 115360 2be1A 339 8.07e-13 2gopA 347 8.90e-13 2z3zA 706 1.56e-12 3hacA 728 2.88e-12 1yr2A 741 3.55e-12 2qr5A 582 5.90e-12 b.69.7.2,c.69.1.33 151278,151279 3dasA 347 7.06e-12 3g0bA 740 1.21e-11 1k3iA 656 1.45e-11 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2wftA 458 2.01e-11 2bklA 695 3.65e-11 1o6gA 710 4.11e-11 b.69.7.1,c.69.1.4 81087,81088 2ismA 352 3.07e-10 2g8sA 353 1.54e-09 2iwaA 266 2.94e-09 2p9wA 334 4.90e-09 2vpjA 301 1.01e-08 3llpA 493 1.96e-08 1zgkA 308 3.51e-08 b.68.11.1 145998 2wg4B 457 6.05e-08 3ii7A 306 1.02e-07 1x2jA 316 1.69e-07 b.68.11.1 121643 2fluX 308 1.90e-07 b.68.11.1 133750 2zwaA 695 2.18e-07 2wg3C 463 2.70e-07 2uvkA 357 4.40e-07 2wozA 318 7.69e-07 1mdaH 368 2.03e-06 b.69.2.1 27637 2eceA 462 3.60e-06 1h6lA 353 6.25e-06 b.68.3.1 60687 3elqA 571 1.83e-05 2b5nA 323 8.58e-05 3gc3B 363 0.000118 3hx6A 570 0.000158 3h6jA 438 0.000200 3b7fA 394 0.000453 2ebsA 789 0.000536 b.69.13.1,b.69.13.1 146772,146773 1sqjA 789 0.000540 b.69.13.1,b.69.13.1 105918,105919 1utcA 363 0.000837 a.118.1.4,b.69.6.1 99914,99915 3hxrA 761 0.000839 1ofzA 312 0.001009 b.68.8.1 86978 3h7nA 729 0.001432 2zuxA 591 0.001750 1q47A 495 0.001854 b.69.12.1 104532 2zuyA 620 0.002046 3cu9A 314 0.007564 3d5yA 314 0.009276 2bwrA 401 0.009697 1suuA 312 0.01084 b.68.10.1 99006 2cn3A 737 0.01487 3d60A 314 0.01573 1wl7A 312 0.01694 b.67.2.1 120996 2w5nA 367 0.01933 3d61A 314 0.02497 3f7fA 729 0.02540 2jkbA 686 0.02854 1shyB 551 0.02941 b.69.12.1,g.16.2.1 105565,105566 3l2oB 312 0.03414 3f6kA 685 0.03432 2w20A 471 0.05243 3kvcA 533 0.09470 1zi0A 307 0.09893 2w38A 438 0.1051 1wp5A 323 0.1064 b.68.10.1 114780 2iwkA 642 0.1154 3silA 379 0.1177 b.68.1.1 27542 1gyhA 318 0.1553 b.67.2.1 70757 2vw2A 697 0.1724 3fsnA 533 0.1789 2j04A 588 0.2099 3l6vA 370 0.2920 1uv4A 293 0.3001 b.67.2.1 119705 3kciA 389 0.3185 2jd4A 383 0.3639 1olzA 663 0.3805 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 3cpnA 330 0.4488 3kstA 306 0.4811 1fwxA 595 0.5651 b.6.1.4,b.69.3.1 60069,60070 2sliA 679 0.6029 b.29.1.9,b.68.1.1 24274,27611 3lv4A 456 0.6867 1yrzA 528 0.8193 b.29.1.23,b.67.2.1 123948,123949 1xd5A 112 0.9395 b.78.1.1 115155 3flpA 217 1.065 3c2uA 538 1.102 2uzxB 727 1.133 1so7A 382 1.191 b.68.1.1 112106 2bf6A 449 1.687 1kj1D 109 1.723 b.78.1.1 68639 3a0eA 110 2.190 2biwA 490 2.519 1pz7A 204 2.520 b.29.1.4 95405 2bibA 547 2.721 b.109.1.1,d.157.1.8 128581,128582 1iwlA 182 2.771 b.125.1.1 83757 3k1uA 330 3.350 1vkdA 338 3.572 b.67.2.4 108644 1jpcA 109 3.688 b.78.1.1 27986 3fz3A 531 3.851 3lp9A 227 3.900 1jtdB 273 4.370 b.69.5.2 67265 2z8rA 591 4.446 3c3vA 510 4.779 2v05A 311 4.990 1zvtA 256 8.661 2ej8A 160 8.911 1qu0A 191 9.792 b.29.1.4 24225 1w8oA 601 9.835 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3bodA 178 10.04 3dzwA 109 10.50 1s1dA 331 11.78 b.67.3.1 98344 1xksA 450 12.38 b.69.14.1 115422 2ex2A 458 12.43 e.3.1.3 132497 2wl1A 191 12.57 3kf3A 509 13.76 2ac1A 541 14.23 3fvhA 237 15.49 2dpfA 115 15.69 3fijA 254 18.84 1zatA 250 21.10 b.160.1.1,d.335.1.1 124845,124846 3kptA 355 21.63 1w2tA 432 21.86 b.29.1.19,b.67.2.3 120607,120608 2ea7A 434 22.59 2pfrA 294 23.20 1f5jA 199 23.72 b.29.1.11 24342 3l04A 359 25.25 3hihA 223 25.31 3fpkA 251 25.90 2ihoA 293 26.62 b.42.2.1,d.3.1.18 147681,147682 2cl2A 298 26.65 2o34A 250 27.16 d.96.2.2 148565 1h4gA 207 27.33 b.29.1.11 70863 3kf5A 512 28.43 2hboA 158 28.46 d.38.1.5 136319 3idaA 587 29.01 1ep1B 261 29.21 b.43.4.2,c.25.1.3 25665,31555 1a8pA 258 29.67 b.43.4.2,c.25.1.1 25654,31544 1ntvA 152 29.95 b.55.1.2 86168 3bk5A 237 30.45 1y7bA 542 30.89 b.29.1.23,b.67.2.1 122687,122688 3liuA 402 30.96 2f9sA 151 31.09 c.47.1.10 133168 2a8jA 420 31.24 2bjfA 329 31.24 1pbeA 394 31.57 c.3.1.2,d.16.1.2 30338,37869 3c12A 138 31.94 3hikA 237 32.86 1n1tA 641 33.44 b.29.1.15,b.68.1.1 79821,79822 3l06A 359 34.64 3cjyA 259 35.03 2vouA 397 35.20 c.3.1.2,d.16.1.2 153389,153390 3l02A 359 35.21 2iwgB 181 35.50 b.29.1.22 145548 3c7fA 487 35.69 1jfuA 186 36.44 c.47.1.10 62940 1p4kA 295 36.67 d.153.1.5 87772 2wk0A 265 36.77 2d5fA 493 37.01 1m40A 263 37.01 e.3.1.1 74437 3juuA 280 39.31 2qdxA 257 41.00 2r16A 182 41.21 1s7jA 262 41.95 d.21.1.2 98647 1lu4A 136 42.50 c.47.1.10 91124 1u0kA 288 43.07 d.21.1.2,d.21.1.2 107547,107548 1v9wA 130 43.58 c.47.1.16 108453 3c7xA 196 43.88 2zpdA 190 44.10 2e9qA 459 44.55 2aa4A 289 46.38 c.55.1.10,c.55.1.10 126465,126466 3kcmA 154 48.25 1n9bA 265 48.58 e.3.1.1 85463 1genA 218 49.74 b.66.1.1 27536 1yifA 533 50.26 b.29.1.23,b.67.2.1 123283,123284 2vpuA 354 51.64 1p5fA 189 52.79 c.23.16.2 94142 1at0A 145 54.29 b.86.1.1 28374 1itvA 195 55.69 b.66.1.1 76791 2gf3A 389 56.77 c.3.1.2,d.16.1.3 135070,135071 3kznA 359 57.00 1o4yA 288 58.11 b.29.1.2 92473 2yzqA 282 58.87 d.37.1.1,d.37.1.1 153904,153905 2fy6A 143 58.96 c.47.1.10 134344 3l05A 359 59.11 1ksiA 642 59.77 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2qm1A 326 60.36 1o97D 320 60.87 c.26.2.3,c.31.1.2 81233,81234 3k2iA 422 61.06 3hbcA 320 61.39 2o9cA 342 61.67 d.110.2.1,d.110.3.9 148684,148685 1xtzA 264 62.81 1zc6A 305 62.82 c.55.1.5,c.55.1.5 124888,124889 2w39A 298 63.13 2w08A 204 64.72 2f0xA 148 70.67 d.38.1.5 132673 2rk3A 197 71.11 1y7mA 164 71.29 b.160.1.1,d.7.1.1 122696,122697 3a3dA 453 71.74 1yoxA 250 72.14 b.82.5.2 123789 3hkxA 283 72.37 1h30A 422 72.71 b.29.1.4,b.29.1.4 76604,76605 3itjA 338 75.30 3c5aA 264 75.63 2gpjA 252 76.42 3fosA 214 78.16 1ijbA 202 79.10 c.62.1.1 71229 1rypG 244 79.77 d.153.1.4 41938 2pz4A 239 79.99 1uypA 432 80.01 b.29.1.19,b.67.2.3 100176,100177 1bxoA 323 80.86 b.50.1.2 26805 3tglA 269 81.93 c.69.1.17 34733 3gf8A 296 82.45 2jayA 291 83.82 3hlkA 446 84.01 1tdzA 272 84.80 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 3fx3A 237 84.91 3f6tA 533 85.23 2h0bA 184 85.54 3e0jA 476 87.08 1c3mA 147 87.17 b.77.3.1 27983 3jqqA 316 89.30 3b3qE 197 89.58 b.29.1.4 154813