# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbiB 354 5.47e-17 1gotB 340 6.70e-17 b.69.4.1 27648 2h14A 317 6.74e-17 2bcjB 340 8.34e-17 b.69.4.1 128289 3emhA 318 1.03e-16 1a0rB 340 1.09e-16 b.69.4.1 27658 2gnqA 336 1.11e-16 2z2nA 299 1.98e-16 2qc5A 300 4.00e-16 1nr0A 611 4.16e-16 b.69.4.1,b.69.4.1 86078,86079 1gxrA 337 7.03e-16 b.69.4.1 70722 1r5mA 425 9.84e-16 3fm0A 345 1.15e-15 3frxA 319 1.21e-15 1k8kC 372 2.32e-15 b.69.4.1 68308 3ei4B 436 2.37e-15 2qxvA 361 3.58e-15 1rwiA 270 5.16e-15 b.68.9.1 97987 3dxkC 372 5.42e-15 3fvzA 329 5.58e-15 1pguA 615 6.13e-15 b.69.4.1,b.69.4.1 88069,88070 3acpA 417 1.02e-14 3k26A 366 1.25e-14 3hrpA 409 1.27e-14 3dwlC 377 1.36e-14 3ei3B 383 1.54e-14 1ri6A 343 1.65e-14 b.69.11.1 97503 3hfqA 347 1.72e-14 1q7fA 286 1.75e-14 b.68.9.1 96036 2aq5A 402 1.88e-14 3i2nA 357 2.16e-14 1l0qA 391 2.70e-14 b.1.3.1,b.69.2.3 77644,77645 2dg1A 333 2.80e-14 b.68.6.1 131493 3iiwA 365 3.00e-14 3c99A 432 3.34e-14 1nexB 464 3.39e-14 a.158.1.1,b.69.4.1 80443,80444 2p4oA 306 3.40e-14 b.68.6.3 149216 3greA 437 3.98e-14 2pm7B 297 5.00e-14 3bwsA 433 5.40e-14 3cfsB 414 5.69e-14 2hesX 330 6.72e-14 1yfqA 342 7.94e-14 b.69.4.2 116680 2ovrB 445 1.15e-13 a.158.1.1,b.69.4.1 145735,145736 2oajA 902 1.23e-13 3dw8B 447 1.27e-13 3li5A 314 1.39e-13 1pjxA 314 1.42e-13 b.68.6.1 104167 3li3A 314 1.45e-13 3i1cA 324 1.69e-13 1pbyB 337 2.06e-13 b.69.2.2 94422 3gfcA 425 2.25e-13 3e5zA 296 2.45e-13 1p22A 435 3.04e-13 a.158.1.1,b.69.4.1 87715,87716 3f3fA 351 3.39e-13 3hxjA 330 3.43e-13 3li4A 314 3.69e-13 2oizA 361 3.80e-13 3dsmA 328 4.40e-13 2qe8A 343 4.73e-13 1sq9A 397 6.41e-13 b.69.4.1 105889 1kb0A 677 6.90e-13 a.3.1.6,b.70.1.1 68378,68379 2ghsA 326 7.07e-13 b.68.6.1 135209 2gc7A 386 7.65e-13 b.69.2.1 134954 1s4uX 407 8.89e-13 b.69.4.1 112027 3c75H 426 1.03e-12 3fgbA 361 1.18e-12 3dr2A 305 1.30e-12 2vduB 450 1.31e-12 2agyA 361 1.34e-12 1jmxB 349 1.55e-12 b.69.2.2 66906 2ojhA 297 1.69e-12 2hqsA 415 2.53e-12 b.68.4.1,c.51.2.1 136662,136663 2ad6A 571 3.09e-12 b.70.1.1 126568 2iaaA 390 3.93e-12 2j04B 524 4.39e-12 2oitA 434 4.90e-12 2fp8A 322 5.49e-12 1jofA 365 5.57e-12 b.69.10.1 71775 2w18A 356 5.75e-12 1k32A 1045 7.63e-12 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1w6sA 599 1.22e-11 b.70.1.1 114284 1npeA 267 1.37e-11 b.68.5.1 92032 3kyaA 496 1.37e-11 3c5mA 396 1.43e-11 1yiqA 689 1.52e-11 3g4eA 297 2.16e-11 3ei3A 1158 2.45e-11 1kv9A 668 2.82e-11 a.3.1.6,b.70.1.1 73056,73057 1v04A 355 4.05e-11 b.68.6.2 100240 3e0cA 1140 4.19e-11 2d5lA 706 9.04e-11 2hu5A 582 9.88e-11 b.69.7.2,c.69.1.33 136763,136764 1cruA 454 1.19e-10 b.68.2.1 27617 2be1A 339 1.80e-10 1orvA 728 2.13e-10 b.70.3.1,c.69.1.24 87354,87355 1xipA 388 5.53e-10 b.69.14.1 115360 1k3iA 656 6.14e-10 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2gopA 347 7.14e-10 1h2wA 710 1.11e-09 b.69.7.1,c.69.1.4 76596,76597 1yr2A 741 1.13e-09 3dasA 347 1.27e-09 2z3zA 706 2.15e-09 2wftA 458 3.74e-09 2qr5A 582 3.87e-09 b.69.7.2,c.69.1.33 151278,151279 3hacA 728 6.54e-09 3g0bA 740 8.04e-09 2bklA 695 1.43e-08 2ismA 352 3.51e-08 1o6gA 710 4.19e-08 b.69.7.1,c.69.1.4 81087,81088 3llpA 493 7.63e-08 2g8sA 353 2.32e-07 2p9wA 334 3.99e-07 2vpjA 301 6.92e-07 1zgkA 308 7.44e-07 b.68.11.1 145998 2iwaA 266 1.09e-06 1x2jA 316 2.88e-06 b.68.11.1 121643 2fluX 308 3.41e-06 b.68.11.1 133750 2wg4B 457 4.01e-06 3ii7A 306 4.41e-06 2wg3C 463 5.38e-06 2uvkA 357 8.98e-06 3elqA 571 1.63e-05 2zwaA 695 1.98e-05 2wozA 318 2.06e-05 2eceA 462 9.81e-05 1h6lA 353 0.000113 b.68.3.1 60687 1mdaH 368 0.000153 b.69.2.1 27637 3hx6A 570 0.000532 2ebsA 789 0.001287 b.69.13.1,b.69.13.1 146772,146773 3h6jA 438 0.001964 2zuyA 620 0.002013 1sqjA 789 0.004687 b.69.13.1,b.69.13.1 105918,105919 2b5nA 323 0.005358 2zuxA 591 0.005896 3b7fA 394 0.007177 2cn3A 737 0.01138 2iwkA 642 0.01603 2jkbA 686 0.01772 3gc3B 363 0.01773 1fwxA 595 0.02476 b.6.1.4,b.69.3.1 60069,60070 1q47A 495 0.02915 b.69.12.1 104532 1ofzA 312 0.04599 b.68.8.1 86978 3f6kA 685 0.07182 3hxrA 761 0.08807 2w5nA 367 0.1179 1zi0A 307 0.1190 3h7nA 729 0.1200 1utcA 363 0.1504 a.118.1.4,b.69.6.1 99914,99915 2vw2A 697 0.1786 1wl7A 312 0.1863 b.67.2.1 120996 2sliA 679 0.1910 b.29.1.9,b.68.1.1 24274,27611 3cu9A 314 0.2098 2w20A 471 0.2485 3l2oB 312 0.2700 3silA 379 0.2832 b.68.1.1 27542 3d60A 314 0.2993 3d61A 314 0.3004 1wp5A 323 0.3480 b.68.10.1 114780 1shyB 551 0.3798 b.69.12.1,g.16.2.1 105565,105566 1suuA 312 0.4148 b.68.10.1 99006 3d5yA 314 0.5569 2w38A 438 0.6798 3kciA 389 0.8321 1so7A 382 0.9447 b.68.1.1 112106 3kvcA 533 1.084 1olzA 663 1.121 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1gyhA 318 1.271 b.67.2.1 70757 1yrzA 528 1.277 b.29.1.23,b.67.2.1 123948,123949 3fsnA 533 1.325 3c2uA 538 1.395 2jd4A 383 1.396 3lv4A 456 1.435 3l6vA 370 1.645 3kstA 306 1.714 3cpnA 330 1.814 1w8oA 601 2.015 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2z8rA 591 2.418 1uv4A 293 2.624 b.67.2.1 119705 2j04A 588 2.669 3f7fA 729 3.043 3flpA 217 3.377 3fz3A 531 3.529 3kptA 355 4.169 2bf6A 449 4.252 2bwrA 401 4.312 3c3vA 510 4.757 1vkdA 338 5.151 b.67.2.4 108644 3k1uA 330 5.155 2biwA 490 6.098 3a0eA 110 6.652 2uzxB 727 7.476 1yifA 533 7.997 b.29.1.23,b.67.2.1 123283,123284 1xd5A 112 8.172 b.78.1.1 115155 3c7fA 487 8.414 1s1dA 331 9.172 b.67.3.1 98344 1kj1D 109 9.642 b.78.1.1 68639 1n1tA 641 11.25 b.29.1.15,b.68.1.1 79821,79822 2bibA 547 12.04 b.109.1.1,d.157.1.8 128581,128582 2ej8A 160 13.05 2d5fA 493 13.60 1pz7A 204 13.85 b.29.1.4 95405 2ac1A 541 14.48 1jpcA 109 15.32 b.78.1.1 27986 2hfsA 332 16.46 2ex2A 458 16.97 e.3.1.3 132497 2wl1A 191 17.65 3dzwA 109 17.75 2v05A 311 18.68 3cjyA 259 18.90 2hboA 158 19.18 d.38.1.5 136319 1y7bA 542 22.74 b.29.1.23,b.67.2.1 122687,122688 1qu0A 191 23.44 b.29.1.4 24225 1jfuA 186 24.39 c.47.1.10 62940 2dpfA 115 26.29 1uypA 432 26.85 b.29.1.19,b.67.2.3 100176,100177 2iwgB 181 27.55 b.29.1.22 145548 1wuuA 399 28.44 d.14.1.5,d.58.26.7 114900,114901 1iwlA 182 30.12 b.125.1.1 83757 3l5eA 414 30.75 1xksA 450 30.86 b.69.14.1 115422 1u0kA 288 32.61 d.21.1.2,d.21.1.2 107547,107548 1zvtA 256 34.78 2e9qA 459 38.07 1w2tA 432 39.29 b.29.1.19,b.67.2.3 120607,120608 1ksiA 642 39.30 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1jtdB 273 40.00 b.69.5.2 67265 3idaA 587 42.02 1s7jA 262 42.88 d.21.1.2 98647 2vouA 397 43.84 c.3.1.2,d.16.1.2 153389,153390 1w5dA 462 45.57 e.3.1.3 120642 2r16A 182 46.01 1bxoA 323 47.07 b.50.1.2 26805 1ms9A 648 47.29 b.29.1.15,b.68.1.1 85088,85089 2bw8A 227 47.75 b.29.1.11 129324 2w1vA 276 51.20 2cl2A 298 52.78 3hkxA 283 52.91 2wjoA 412 53.23 2ea7A 434 53.62 1ijbA 202 54.49 c.62.1.1 71229 1juhA 350 56.64 b.82.1.5 71884 1kdvA 370 58.57 c.41.1.2 68486 2jayA 291 58.86 3c9zA 258 59.77 3a3dA 453 61.82 1w0pA 781 62.21 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1a9xB 379 62.63 c.8.3.1,c.23.16.1 30732,31409 3malA 199 63.76 2gf3A 389 64.03 c.3.1.2,d.16.1.3 135070,135071 3juuA 280 64.50 2ww8A 893 67.47 1h4gA 207 68.19 b.29.1.11 70863 3fx3A 237 70.41 2f9sA 151 70.93 c.47.1.10 133168 2oxgB 124 71.48 2cohA 202 72.63 a.4.5.4,b.82.3.2 130677,130678 3lp9A 227 72.74 3bodA 178 73.16 1es5A 262 74.22 e.3.1.1 42679 3fijA 254 74.51 2zcwA 202 74.62 1k9vF 201 74.64 c.23.16.1 68365 3a3pA 329 75.58 1dpjA 329 77.22 b.50.1.2 26828 3c12A 138 77.63 3h3zA 235 78.45 3flcO 518 78.55 1oewA 329 79.06 b.50.1.2 86924 3e0jA 476 83.74 2vdrA 452 85.49 3kb5A 193 85.71 1at0A 145 86.06 b.86.1.1 28374 1wxxA 382 86.53 b.122.1.9,c.66.1.51 121418,121419 1v9wA 130 86.79 c.47.1.16 108453 2o34A 250 87.85 d.96.2.2 148565 3bbjA 272 88.07 3gf8A 296 88.25 2bjfA 329 88.46 2dfuA 264 89.79