# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gotB 340 0.000108 b.69.4.1 27648 3emhA 318 0.000161 2h14A 317 0.000169 1a0rB 340 0.000184 b.69.4.1 27658 2bcjB 340 0.000184 b.69.4.1 128289 2gnqA 336 0.000186 2pbiB 354 0.000211 3frxA 319 0.000232 1gxrA 337 0.000322 b.69.4.1 70722 1l0qA 391 0.000456 b.1.3.1,b.69.2.3 77644,77645 1r5mA 425 0.000479 1nr0A 611 0.000665 b.69.4.1,b.69.4.1 86078,86079 1pbyB 337 0.000784 b.69.2.2 94422 3fm0A 345 0.000901 1nexB 464 0.001050 a.158.1.1,b.69.4.1 80443,80444 1q7fA 286 0.001112 b.68.9.1 96036 3bwsA 433 0.001136 3ei3B 383 0.001140 1k8kC 372 0.001286 b.69.4.1 68308 1pguA 615 0.001392 b.69.4.1,b.69.4.1 88069,88070 3acpA 417 0.001529 3fvzA 329 0.001553 2ovrB 445 0.001682 a.158.1.1,b.69.4.1 145735,145736 3ei4B 436 0.001776 3i2nA 357 0.001834 2hesX 330 0.001877 3dxkC 372 0.002109 2qxvA 361 0.002402 3dsmA 328 0.002503 1jmxB 349 0.002626 b.69.2.2 66906 1ri6A 343 0.002703 b.69.11.1 97503 3k26A 366 0.002748 2dg1A 333 0.002778 b.68.6.1 131493 1rwiA 270 0.003157 b.68.9.1 97987 3greA 437 0.003457 3hfqA 347 0.003549 1p22A 435 0.003790 a.158.1.1,b.69.4.1 87715,87716 3c99A 432 0.003829 3iiwA 365 0.004044 2qe8A 343 0.004143 1s4uX 407 0.004178 b.69.4.1 112027 2qc5A 300 0.004290 2aq5A 402 0.004304 2pm7B 297 0.004378 2oizA 361 0.004468 1k32A 1045 0.004493 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2gc7A 386 0.004551 b.69.2.1 134954 3li3A 314 0.004907 1kb0A 677 0.004928 a.3.1.6,b.70.1.1 68378,68379 2ad6A 571 0.004930 b.70.1.1 126568 3hrpA 409 0.005012 3dr2A 305 0.005045 3dw8B 447 0.005122 2oajA 902 0.005247 2z2nA 299 0.005424 3cfsB 414 0.005500 3hxjA 330 0.005543 3dwlC 377 0.005613 3i1cA 324 0.006022 2p4oA 306 0.006052 b.68.6.3 149216 3f3fA 351 0.006190 3gfcA 425 0.006194 1sq9A 397 0.006197 b.69.4.1 105889 1pjxA 314 0.006202 b.68.6.1 104167 2agyA 361 0.006266 2ghsA 326 0.006717 b.68.6.1 135209 3c75H 426 0.006849 2vduB 450 0.007149 3fgbA 361 0.007396 3e5zA 296 0.007470 2w18A 356 0.007629 1yiqA 689 0.008124 3li4A 314 0.008468 3li5A 314 0.008914 1kv9A 668 0.009052 a.3.1.6,b.70.1.1 73056,73057 3g4eA 297 0.009200 1yfqA 342 0.009749 b.69.4.2 116680 3c5mA 396 0.01244 1w6sA 599 0.01345 b.70.1.1 114284 2ojhA 297 0.01471 1jofA 365 0.01601 b.69.10.1 71775 2d5lA 706 0.01616 2iaaA 390 0.01669 1npeA 267 0.02017 b.68.5.1 92032 2z3zA 706 0.02034 2hqsA 415 0.02131 b.68.4.1,c.51.2.1 136662,136663 2fp8A 322 0.02574 2oitA 434 0.03022 1cruA 454 0.03481 b.68.2.1 27617 3kyaA 496 0.03617 3ei3A 1158 0.04443 3dasA 347 0.04528 2j04B 524 0.04589 2ismA 352 0.05161 1v04A 355 0.05341 b.68.6.2 100240 2iwaA 266 0.05564 3e0cA 1140 0.05697 1o6gA 710 0.06611 b.69.7.1,c.69.1.4 81087,81088 1h2wA 710 0.07401 b.69.7.1,c.69.1.4 76596,76597 2gopA 347 0.07912 1orvA 728 0.08147 b.70.3.1,c.69.1.24 87354,87355 2qr5A 582 0.08880 b.69.7.2,c.69.1.33 151278,151279 3hacA 728 0.08905 3g0bA 740 0.09023 3elqA 571 0.09303 2hu5A 582 0.1029 b.69.7.2,c.69.1.33 136763,136764 2vpjA 301 0.1223 2g8sA 353 0.1252 2bklA 695 0.1370 2p9wA 334 0.1444 1k3iA 656 0.1521 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1zgkA 308 0.1532 b.68.11.1 145998 2wftA 458 0.1617 3ii7A 306 0.1618 2eceA 462 0.1807 2wg4B 457 0.1839 1yr2A 741 0.1845 1xipA 388 0.1899 b.69.14.1 115360 1x2jA 316 0.1935 b.68.11.1 121643 2uvkA 357 0.2655 2fluX 308 0.2687 b.68.11.1 133750 2wg3C 463 0.2758 2wozA 318 0.2896 1mdaH 368 0.3102 b.69.2.1 27637 2zwaA 695 0.4006 3gc3B 363 0.4317 1utcA 363 0.7793 a.118.1.4,b.69.6.1 99914,99915 1fwxA 595 0.9136 b.6.1.4,b.69.3.1 60069,60070 2b5nA 323 0.9379 2be1A 339 1.084 2iwkA 642 1.173 3h6jA 438 1.186 1h6lA 353 1.194 b.68.3.1 60687 3hx6A 570 1.436 2biwA 490 1.591 2zuyA 620 2.208 1suuA 312 3.574 b.68.10.1 99006 2zuxA 591 3.619 2w38A 438 3.901 3d61A 314 3.922 3kvcA 533 3.940 3fsnA 533 4.018 2z8rA 591 4.274 3llpA 493 4.770 3cu9A 314 4.793 1wl7A 312 5.646 b.67.2.1 120996 2j04A 588 6.187 1sqjA 789 6.288 b.69.13.1,b.69.13.1 105918,105919 3d60A 314 6.335 3d5yA 314 7.552 1uv4A 293 8.035 b.67.2.1 119705 2ebsA 789 8.077 b.69.13.1,b.69.13.1 146772,146773 2vdrA 452 8.173 1wp5A 323 8.267 b.68.10.1 114780 1ofzA 312 8.967 b.68.8.1 86978 1genA 218 10.47 b.66.1.1 27536 3f7fA 729 11.10 3hxrA 761 11.39 1txvA 452 11.57 1itvA 195 11.67 b.66.1.1 76791 2w5nA 367 11.74 1jv2A 957 12.01 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 3c7xA 196 12.66 3l6vA 370 12.71 1vkdA 338 13.28 b.67.2.4 108644 1shyB 551 14.49 b.69.12.1,g.16.2.1 105565,105566 2sliA 679 14.91 b.29.1.9,b.68.1.1 24274,27611 1xksA 450 15.19 b.69.14.1 115422 1zi0A 307 15.60 2cn3A 737 15.99 1q47A 495 16.37 b.69.12.1 104532 1pexA 207 16.52 b.66.1.1 27540 3kstA 306 18.82 2uzxB 727 19.80 3kciA 389 20.95 1s1dA 331 23.65 b.67.3.1 98344 3c2uA 538 23.92 3silA 379 24.05 b.68.1.1 27542 1gyhA 318 24.98 b.67.2.1 70757 2w20A 471 25.81 2v05A 311 26.24 1v3eA 431 26.74 b.68.1.1 100287 2htuA 390 26.90 3f6kA 685 27.48 1y7bA 542 27.60 b.29.1.23,b.67.2.1 122687,122688 1z4vA 532 28.38 1zvtA 256 29.07 2bf6A 449 29.25 3b7fA 394 30.46 2b4wA 315 33.41 b.67.2.5 127866 1hxnA 219 34.69 b.66.1.1 27529 2jkbA 686 35.84 3cpnA 330 40.07 1olzA 663 41.13 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1w8oA 601 41.78 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3cyeA 387 42.20 3beqA 385 43.55 2vw2A 697 43.92 3lp9A 227 44.22 2vzsA 1032 45.21 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 3b7eA 385 46.61 3ckzA 385 47.70 2bibA 547 48.15 b.109.1.1,d.157.1.8 128581,128582 1nscA 390 48.26 b.68.1.1 27591 3h7nA 729 48.66 3lv4A 456 50.52 2vsmA 416 50.88 1yrzA 528 51.19 b.29.1.23,b.67.2.1 123948,123949 3k1uA 330 51.48 2aukA 190 56.34 1ivgA 388 56.43 b.68.1.1 27578 2ww5A 468 56.64 1kshB 152 57.34 b.1.18.8 72915 1ytqA 204 57.84 b.11.1.1,b.11.1.1 124012,124013 1usrA 454 60.25 b.68.1.1 99881 1w0pA 781 66.83 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1b9vA 390 80.14 b.68.1.1 27603 3hn3A 613 80.77