# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 1.46e-25 2pbiB 354 4.63e-25 2gnqA 336 5.84e-25 2qc5A 300 6.15e-25 3emhA 318 6.33e-25 2h14A 317 7.35e-25 2bcjB 340 8.42e-25 b.69.4.1 128289 1a0rB 340 9.11e-25 b.69.4.1 27658 1gotB 340 1.85e-24 b.69.4.1 27648 1gxrA 337 2.47e-24 b.69.4.1 70722 3frxA 319 1.76e-23 1nr0A 611 2.53e-23 b.69.4.1,b.69.4.1 86078,86079 3ei4B 436 3.35e-23 3fm0A 345 5.78e-23 1r5mA 425 1.79e-22 2qxvA 361 4.70e-22 1yfqA 342 7.47e-22 b.69.4.2 116680 3ei3B 383 8.19e-22 3iiwA 365 8.58e-22 3k26A 366 1.03e-21 2ovrB 445 1.20e-21 a.158.1.1,b.69.4.1 145735,145736 3dxkC 372 1.44e-21 1u4cA 349 1.76e-21 b.69.4.2 107666 1k8kC 372 1.88e-21 b.69.4.1 68308 1nexB 464 2.00e-21 a.158.1.1,b.69.4.1 80443,80444 1q7fA 286 2.81e-21 b.68.9.1 96036 1l0qA 391 2.86e-21 b.1.3.1,b.69.2.3 77644,77645 2oitA 434 3.03e-21 3hxjA 330 3.11e-21 1ri6A 343 3.23e-21 b.69.11.1 97503 3fvzA 329 5.63e-21 1p22A 435 7.40e-21 a.158.1.1,b.69.4.1 87715,87716 3i2nA 357 9.69e-21 1pguA 615 1.14e-20 b.69.4.1,b.69.4.1 88069,88070 2iaaA 390 1.24e-20 2aq5A 402 1.55e-20 2agyA 361 2.60e-20 2hesX 330 2.72e-20 1sq9A 397 2.92e-20 b.69.4.1 105889 3hfqA 347 3.01e-20 2oajA 902 3.39e-20 1pbyB 337 3.64e-20 b.69.2.2 94422 2w18A 356 5.96e-20 1jmxB 349 6.18e-20 b.69.2.2 66906 3dw8B 447 6.48e-20 1rwiA 270 7.81e-20 b.68.9.1 97987 2gc7A 386 8.01e-20 b.69.2.1 134954 3dsmA 328 8.99e-20 3c5mA 396 9.64e-20 2ad6A 571 1.03e-19 b.70.1.1 126568 3bwsA 433 1.06e-19 3c99A 432 1.34e-19 3cfsB 414 1.90e-19 1w6sA 599 1.97e-19 b.70.1.1 114284 1kv9A 668 2.01e-19 a.3.1.6,b.70.1.1 73056,73057 1yiqA 689 2.24e-19 2pm7B 297 2.50e-19 2hqsA 415 2.53e-19 b.68.4.1,c.51.2.1 136662,136663 3e5zA 296 2.59e-19 3acpA 417 2.61e-19 2ojhA 297 2.63e-19 1g72A 573 3.39e-19 b.70.1.1 27680 2vduB 450 3.50e-19 3dwlC 377 4.66e-19 1pjxA 314 5.95e-19 b.68.6.1 104167 2dg1A 333 6.04e-19 b.68.6.1 131493 1lrwA 600 6.16e-19 b.70.1.1 91111 3gfcA 425 7.75e-19 2madH 373 9.31e-19 b.69.2.1 27639 1jofA 365 9.74e-19 b.69.10.1 71775 3f3fA 351 1.13e-18 1kb0A 677 1.39e-18 a.3.1.6,b.70.1.1 68378,68379 3ei3A 1158 1.69e-18 3greA 437 1.89e-18 2oizA 361 2.11e-18 3c75H 426 2.54e-18 2j04B 524 3.60e-18 1s4uX 407 5.85e-18 b.69.4.1 112027 3llpA 493 6.18e-18 1k32A 1045 1.04e-17 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3li5A 314 1.04e-17 3e0cA 1140 1.41e-17 3dr2A 305 3.23e-17 2bklA 695 3.90e-17 3hrpA 409 4.36e-17 3fgbA 361 7.20e-17 2ghsA 326 7.46e-17 b.68.6.1 135209 2p4oA 306 3.41e-16 b.68.6.3 149216 2gopA 347 7.11e-16 1cruA 454 7.76e-16 b.68.2.1 27617 1orvA 728 1.05e-15 b.70.3.1,c.69.1.24 87354,87355 2qe8A 343 1.13e-15 3g4eA 297 1.26e-15 1yr2A 741 2.18e-15 3li4A 314 3.37e-15 3i1cA 324 5.87e-15 3li3A 314 6.37e-15 1xfdA 723 8.00e-15 b.70.3.1,c.69.1.24 115251,115252 1npeA 267 3.68e-14 b.68.5.1 92032 1h2wA 710 1.07e-13 b.69.7.1,c.69.1.4 76596,76597 1mdaH 368 1.76e-13 b.69.2.1 27637 1v04A 355 7.14e-13 b.68.6.2 100240 2fp8A 322 9.82e-13 3dasA 347 2.14e-11 2ismA 352 2.51e-11 3kyaA 496 6.56e-11 2z3zA 706 7.73e-10 3elqA 571 2.97e-09 2g8sA 353 4.30e-08 2d5lA 706 4.57e-08 2hu5A 582 1.00e-07 b.69.7.2,c.69.1.33 136763,136764 2be1A 339 1.54e-07 2p9wA 334 1.62e-07 1o6gA 710 1.73e-07 b.69.7.1,c.69.1.4 81087,81088 2iwaA 266 3.35e-07 3g0bA 740 1.18e-06 3hacA 728 1.86e-06 1k3iA 656 1.05e-05 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2wg3C 463 4.51e-05 1zgkA 308 8.04e-05 b.68.11.1 145998 3gc3B 363 8.50e-05 1x2jA 316 0.000204 b.68.11.1 121643 2fluX 308 0.000305 b.68.11.1 133750 3ii7A 306 0.000392 2eceA 462 0.000496 2vpjA 301 0.000630 2qr5A 582 0.001328 b.69.7.2,c.69.1.33 151278,151279 2zwaA 695 0.002182 1utcA 363 0.002633 a.118.1.4,b.69.6.1 99914,99915 2b5nA 323 0.003077 3hx6A 570 0.004341 3b7fA 394 0.01200 1h6lA 353 0.01516 b.68.3.1 60687 2pooA 355 0.01571 b.68.3.1 27626 2wozA 318 0.01845 2sliA 679 0.03021 b.29.1.9,b.68.1.1 24274,27611 2vw2A 697 0.04012 1xipA 388 0.04469 b.69.14.1 115360 3kciA 389 0.06215 2wftA 458 0.07156 2uvkA 357 0.08902 2jkbA 686 0.1208 2cn3A 737 0.1301 2bibA 547 0.1950 b.109.1.1,d.157.1.8 128581,128582 3h7nA 729 0.1981 1ofzA 312 0.2131 b.68.8.1 86978 2ww5A 468 0.2535 2bf6A 449 0.3857 1jtdB 273 0.4472 b.69.5.2 67265 2z8rA 591 0.4493 3hxrA 761 0.4800 2wg4B 457 0.5700 1so7A 382 0.7749 b.68.1.1 112106 3cu9A 314 0.7980 2ebsA 789 0.8019 b.69.13.1,b.69.13.1 146772,146773 2w20A 471 0.8275 3lv4A 456 0.8405 3c9zA 258 0.8746 2aukA 190 0.8821 2v05A 311 0.9191 1wl7A 312 0.9690 b.67.2.1 120996 1sqjA 789 1.026 b.69.13.1,b.69.13.1 105918,105919 1q47A 495 1.028 b.69.12.1 104532 2w5nA 367 1.145 1zi0A 307 1.508 3d5yA 314 1.600 1suuA 312 1.608 b.68.10.1 99006 3f7fA 729 1.895 1xksA 450 1.908 b.69.14.1 115422 3kptA 355 1.959 1qxmA 300 1.974 b.42.2.1,b.42.2.1 96533,96534 1shyB 551 2.158 b.69.12.1,g.16.2.1 105565,105566 3c12A 138 2.178 2in0A 139 2.573 3d61A 314 2.617 3d60A 314 2.768 3ibzA 191 3.255 2o62A 270 4.099 b.60.1.9,b.60.1.9 148622,148623 1s1dA 331 4.137 b.67.3.1 98344 2ww8A 893 4.503 2j04A 588 4.758 1f5fA 205 5.238 b.29.1.4 24222 1w0pA 781 5.543 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2iwkA 642 6.146 2hboA 158 6.522 d.38.1.5 136319 1vclA 432 6.680 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1uv4A 293 7.304 b.67.2.1 119705 1fwxA 595 7.631 b.6.1.4,b.69.3.1 60069,60070 1wp5A 323 7.844 b.68.10.1 114780 3gg4A 554 8.625 2ayhA 214 8.776 b.29.1.2 24172 3ah2A 288 8.989 1gydB 315 9.564 b.67.2.1 70751 1zvtA 256 9.667 3c7fA 487 10.21 3cjyA 259 10.72 1ybiA 288 10.78 3hikA 237 11.16 3b3qE 197 11.35 b.29.1.4 154813 2uytA 489 11.37 3gbtA 504 11.70 3ifrA 508 11.77 3kf5A 512 12.57 2wjsA 608 13.10 2ej8A 160 13.22 3kstA 306 13.29 1iwlA 182 13.37 b.125.1.1 83757 2h0bA 184 13.88 1ajoA 214 14.15 b.29.1.2 24179 3h3nO 506 14.60 3flcO 518 14.67 3lb9A 182 15.01 1at0A 145 15.54 b.86.1.1 28374 1m6kA 251 16.19 e.3.1.1 78695 3h46O 506 16.87 1gyhA 318 17.67 b.67.2.1 70757 3kb5A 193 17.78 3hkxA 283 17.92 2zf5O 497 18.01 3l6vA 370 18.56 3malA 199 18.56 1w8oA 601 18.97 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3k85A 357 19.05 1kj1D 109 19.36 b.78.1.1 68639 2d4wA 504 20.45 3f6kA 685 21.17 2ifsA 169 21.43 3hz6A 511 21.49 2w7qA 204 22.87 1mkeA 152 23.81 b.55.1.4 79231 3ll3A 504 24.09 2gkeA 274 24.76 d.21.1.1,d.21.1.1 135329,135330 1pz7A 204 24.91 b.29.1.4 95405 3ld7A 101 26.36 2e4qA 109 26.38 2je8A 848 26.92 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 3d7eO 505 27.28 1t9fA 187 27.54 b.42.6.1 106710 2q4nA 166 28.42 b.60.1.8 139871 2a2cA 478 28.88 3hlkA 446 30.57 1ddmA 135 30.87 b.55.1.2 26993 2ihoA 293 30.91 b.42.2.1,d.3.1.18 147681,147682 3hihA 223 31.74 3l0qA 554 31.76 2gf6A 135 31.94 d.38.1.1 135077 1h30A 422 32.13 b.29.1.4,b.29.1.4 76604,76605 2kppA 114 32.77 2w1vA 276 33.04 1n9bA 265 33.86 e.3.1.1 85463 2yzyA 200 34.45 3ep0A 170 35.32 1ntvA 152 35.77 b.55.1.2 86168 1qu0A 191 35.89 b.29.1.4 24225 2d5fA 493 36.41 2itmA 484 36.50 3f8hA 150 36.74 3bbjA 272 37.27 3lorA 160 37.61 1vkdA 338 38.29 b.67.2.4 108644 2erfA 209 39.28 b.29.1.4 132287 2elaA 175 40.57 1ly2A 130 40.70 g.18.1.1,g.18.1.1 74335,74336 3fvhA 237 40.97 2jxwA 75 41.28 1uypA 432 41.83 b.29.1.19,b.67.2.3 100176,100177 1yrzA 528 42.62 b.29.1.23,b.67.2.1 123948,123949 1f89A 291 42.78 d.160.1.1 64988 1uxzA 131 42.89 b.18.1.10 100170 3gqsA 106 42.97 3h6jA 438 43.21 2dejA 350 43.28 1wl8A 189 44.20 c.23.16.1 120997 2phlA 397 44.66 b.82.1.2,b.82.1.2 28082,28083 3ewlA 142 44.73 2wl1A 191 44.94 3ihxA 152 45.72 1v58A 241 47.41 c.47.1.9,d.17.3.1 108371,108372 2eabA 899 47.44 2fvgA 340 47.45 b.49.3.1,c.56.5.4 134201,134202 3fzyA 234 47.75 2ov9A 216 50.13 d.38.1.5 149034 3ezwA 526 50.45 1ukfA 188 51.37 d.3.1.10 99488 2ijaA 295 51.37 1wlgA 299 51.85 b.152.1.1 114726 2pimA 141 52.22 1vm9A 111 52.80 b.33.1.1 108886 2zahA 331 53.06 2fhqA 141 53.37 b.45.1.1 133497 3bodA 178 53.44 1u9tA 354 53.46 e.62.1.1 119651 3me7A 170 53.48 1knmA 130 53.59 b.42.2.1 72781 1jfuA 186 53.71 c.47.1.10 62940 1bu6O 501 54.78 c.55.1.4,c.55.1.4 33499,33500 2zuxA 591 54.98 2isnA 364 55.19 3lwaA 183 57.38 3fnsA 332 57.45 2pagA 135 57.64 d.369.1.1 149343 2hq7A 146 57.85 b.45.1.1 136657 1bfgA 146 58.84 b.42.1.1 25485 1olzA 663 59.12 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2a13A 166 60.45 b.60.1.8 125971 2fbeA 201 60.64 b.29.1.22 133241 3c2uA 538 60.93 2e9qA 459 61.18 3idaA 587 62.13 3hn9A 123 62.47 1j1yA 136 62.64 d.38.1.5 90776 1o7dD 282 64.06 2oxgB 124 64.57 3lwgA 145 64.65 1od5A 492 64.93 b.82.1.2,b.82.1.2 86832,86833 2w38A 438 66.24 2in3A 216 66.33 3gf8A 296 67.20 1kkhA 317 67.42 d.14.1.5,d.58.26.3 72645,72646 3by9A 260 67.44 3f7xA 151 67.72 3db5A 151 68.47 3kcmA 154 69.71 1mt6A 280 70.08 b.76.2.1,b.85.7.1 79446,79447 3gg6A 156 71.65 2f2fA 222 71.88 b.42.2.1 132810 2oafA 151 72.68 d.38.1.1 148695 1o6wA 75 72.83 b.72.1.1,b.72.1.1 81103,81104 3k1wA 341 73.29 2ho9A 167 73.89 3fveA 290 73.92 3silA 379 74.19 b.68.1.1 27542 2zpdA 190 74.61 1f5jA 199 74.91 b.29.1.11 24342 1e30A 155 75.36 b.6.1.1 23016 2qpwA 149 75.62 1y7mA 164 75.95 b.160.1.1,d.7.1.1 122696,122697 2ac1A 541 75.97 2hc5A 117 76.15 d.352.1.1 147255 1es5A 262 76.83 e.3.1.1 42679 3khyA 384 77.46 2f9sA 151 78.12 c.47.1.10 133168 2cohA 202 78.77 a.4.5.4,b.82.3.2 130677,130678 2f2fC 186 79.52 b.42.2.1 132812 2hx5A 152 80.04 d.38.1.1 136837 2gk3A 256 81.05 c.23.16.9 147123 3fzxA 218 81.29 3hm0A 167 81.57 3g7dA 443 81.65 2r19A 159 81.78 2obdA 476 82.27 1aqcA 172 82.48 b.55.1.2 26983 2b1kA 168 83.98 1umwA 237 85.85 d.223.1.2,d.223.1.2 99631,99632 3d3iA 761 86.49 2pfrA 294 86.73 1h1aA 191 87.54 b.29.1.11 83450 1rieA 129 87.57 b.33.1.1 24427 1op4A 159 89.82 b.1.6.1 93397