# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 4.67e-25 2pbiB 354 6.12e-25 3emhA 318 8.86e-25 2gnqA 336 9.03e-25 2h14A 317 1.14e-24 1a0rB 340 1.22e-24 b.69.4.1 27658 2bcjB 340 1.71e-24 b.69.4.1 128289 1gotB 340 2.36e-24 b.69.4.1 27648 2qc5A 300 2.61e-24 1gxrA 337 4.80e-24 b.69.4.1 70722 3frxA 319 1.89e-23 1nr0A 611 3.69e-23 b.69.4.1,b.69.4.1 86078,86079 3ei4B 436 8.69e-23 3fm0A 345 1.12e-22 1r5mA 425 4.04e-22 2qxvA 361 8.03e-22 3ei3B 383 1.03e-21 1yfqA 342 1.47e-21 b.69.4.2 116680 2ovrB 445 1.53e-21 a.158.1.1,b.69.4.1 145735,145736 1nexB 464 1.89e-21 a.158.1.1,b.69.4.1 80443,80444 3iiwA 365 2.30e-21 3k26A 366 2.90e-21 3dxkC 372 2.90e-21 1k8kC 372 3.82e-21 b.69.4.1 68308 1u4cA 349 4.27e-21 b.69.4.2 107666 1l0qA 391 4.74e-21 b.1.3.1,b.69.2.3 77644,77645 3hxjA 330 4.80e-21 2oitA 434 7.53e-21 1q7fA 286 7.91e-21 b.68.9.1 96036 1p22A 435 1.01e-20 a.158.1.1,b.69.4.1 87715,87716 1ri6A 343 1.05e-20 b.69.11.1 97503 3i2nA 357 1.21e-20 3fvzA 329 1.21e-20 1pguA 615 1.68e-20 b.69.4.1,b.69.4.1 88069,88070 2iaaA 390 2.75e-20 2aq5A 402 3.05e-20 2hesX 330 4.25e-20 1pbyB 337 4.78e-20 b.69.2.2 94422 2oajA 902 5.99e-20 3dw8B 447 6.29e-20 1sq9A 397 6.31e-20 b.69.4.1 105889 2agyA 361 6.47e-20 3hfqA 347 8.66e-20 1jmxB 349 9.57e-20 b.69.2.2 66906 2w18A 356 1.06e-19 3bwsA 433 1.65e-19 2pm7B 297 1.75e-19 2gc7A 386 1.87e-19 b.69.2.1 134954 3dsmA 328 1.91e-19 3c99A 432 2.21e-19 3cfsB 414 2.77e-19 2ad6A 571 2.96e-19 b.70.1.1 126568 1yiqA 689 3.03e-19 3c5mA 396 3.04e-19 1rwiA 270 3.30e-19 b.68.9.1 97987 1w6sA 599 3.61e-19 b.70.1.1 114284 3acpA 417 4.04e-19 1kv9A 668 4.06e-19 a.3.1.6,b.70.1.1 73056,73057 2vduB 450 4.14e-19 3e5zA 296 6.18e-19 1g72A 573 6.74e-19 b.70.1.1 27680 2hqsA 415 7.00e-19 b.68.4.1,c.51.2.1 136662,136663 2ojhA 297 7.05e-19 3gfcA 425 7.92e-19 3greA 437 1.32e-18 1pjxA 314 1.50e-18 b.68.6.1 104167 1lrwA 600 1.54e-18 b.70.1.1 91111 2dg1A 333 1.56e-18 b.68.6.1 131493 3f3fA 351 1.86e-18 2madH 373 2.02e-18 b.69.2.1 27639 1jofA 365 2.08e-18 b.69.10.1 71775 3dwlC 377 3.02e-18 3c75H 426 3.54e-18 1kb0A 677 3.55e-18 a.3.1.6,b.70.1.1 68378,68379 3ei3A 1158 3.56e-18 2oizA 361 5.25e-18 2j04B 524 7.00e-18 1s4uX 407 1.34e-17 b.69.4.1 112027 3e0cA 1140 2.38e-17 3li5A 314 2.40e-17 3llpA 493 3.03e-17 1k32A 1045 3.08e-17 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3hrpA 409 3.86e-17 2bklA 695 9.82e-17 3dr2A 305 1.24e-16 3fgbA 361 1.31e-16 2ghsA 326 2.91e-16 b.68.6.1 135209 2gopA 347 8.18e-16 2p4oA 306 8.56e-16 b.68.6.3 149216 1cruA 454 1.23e-15 b.68.2.1 27617 2qe8A 343 1.78e-15 3g4eA 297 1.79e-15 1orvA 728 3.13e-15 b.70.3.1,c.69.1.24 87354,87355 1yr2A 741 3.89e-15 3li4A 314 5.66e-15 3i1cA 324 9.13e-15 3li3A 314 1.05e-14 1xfdA 723 1.06e-14 b.70.3.1,c.69.1.24 115251,115252 1npeA 267 7.78e-14 b.68.5.1 92032 1h2wA 710 2.76e-13 b.69.7.1,c.69.1.4 76596,76597 1mdaH 368 5.95e-13 b.69.2.1 27637 2fp8A 322 1.30e-12 1v04A 355 1.45e-12 b.68.6.2 100240 3dasA 347 3.93e-11 2ismA 352 5.77e-11 3kyaA 496 7.83e-11 2z3zA 706 7.35e-10 3elqA 571 3.66e-09 2d5lA 706 2.81e-08 2g8sA 353 6.38e-08 2hu5A 582 8.50e-08 b.69.7.2,c.69.1.33 136763,136764 2be1A 339 1.45e-07 2p9wA 334 1.78e-07 1o6gA 710 1.94e-07 b.69.7.1,c.69.1.4 81087,81088 2iwaA 266 3.69e-07 3g0bA 740 1.36e-06 3hacA 728 1.84e-06 1k3iA 656 2.16e-05 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2wg3C 463 2.70e-05 1zgkA 308 9.81e-05 b.68.11.1 145998 3gc3B 363 0.000104 1x2jA 316 0.000429 b.68.11.1 121643 2fluX 308 0.000475 b.68.11.1 133750 3ii7A 306 0.000515 2eceA 462 0.000612 2vpjA 301 0.000667 2qr5A 582 0.000855 b.69.7.2,c.69.1.33 151278,151279 3hx6A 570 0.001424 1utcA 363 0.002168 a.118.1.4,b.69.6.1 99914,99915 2zwaA 695 0.002786 2b5nA 323 0.004987 3b7fA 394 0.01136 2wozA 318 0.03404 2pooA 355 0.03713 b.68.3.1 27626 2sliA 679 0.04388 b.29.1.9,b.68.1.1 24274,27611 1h6lA 353 0.05187 b.68.3.1 60687 2vw2A 697 0.05401 2wftA 458 0.05750 1xipA 388 0.1337 b.69.14.1 115360 2uvkA 357 0.1390 2jkbA 686 0.1516 3kciA 389 0.2033 1ofzA 312 0.2176 b.68.8.1 86978 2bibA 547 0.2228 b.109.1.1,d.157.1.8 128581,128582 1jtdB 273 0.2669 b.69.5.2 67265 3c9zA 258 0.2697 2cn3A 737 0.4059 3hxrA 761 0.4560 1q47A 495 0.4617 b.69.12.1 104532 2wg4B 457 0.4907 2bf6A 449 0.5142 2w20A 471 0.5568 1so7A 382 0.6224 b.68.1.1 112106 2aukA 190 0.6828 1zi0A 307 0.8721 2z8rA 591 0.9735 2v05A 311 0.9827 2ebsA 789 1.064 b.69.13.1,b.69.13.1 146772,146773 3cu9A 314 1.104 1shyB 551 1.159 b.69.12.1,g.16.2.1 105565,105566 1suuA 312 1.201 b.68.10.1 99006 3lv4A 456 1.331 1wl7A 312 1.546 b.67.2.1 120996 3f7fA 729 1.601 1xksA 450 1.649 b.69.14.1 115422 1qxmA 300 1.744 b.42.2.1,b.42.2.1 96533,96534 1fwxA 595 2.121 b.6.1.4,b.69.3.1 60069,60070 2iwkA 642 2.242 3c12A 138 2.243 1sqjA 789 2.499 b.69.13.1,b.69.13.1 105918,105919 3h7nA 729 2.523 3d5yA 314 2.903 2ww8A 893 3.320 2w5nA 367 3.482 2in0A 139 3.534 3d60A 314 4.284 3kptA 355 4.376 3kf5A 512 4.813 2j04A 588 5.251 3d61A 314 5.589 3ibzA 191 6.457 2ww5A 468 6.548 1uv4A 293 6.768 b.67.2.1 119705 2o62A 270 6.906 b.60.1.9,b.60.1.9 148622,148623 2zuxA 591 7.709 1s1dA 331 8.385 b.67.3.1 98344 1w0pA 781 8.858 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1f5fA 205 9.329 b.29.1.4 24222 1mkeA 152 9.648 b.55.1.4 79231 1wp5A 323 9.901 b.68.10.1 114780 1gyhA 318 10.44 b.67.2.1 70757 2h0bA 184 10.72 2uytA 489 11.06 1gydB 315 11.43 b.67.2.1 70751 2ayhA 214 11.49 b.29.1.2 24172 3malA 199 11.50 2wjsA 608 11.56 3gg4A 554 12.10 3hikA 237 12.40 3kb5A 193 12.97 1zvtA 256 13.23 3c7fA 487 13.26 2ej8A 160 13.34 1w8oA 601 13.69 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3ifrA 508 14.29 1iwlA 182 14.36 b.125.1.1 83757 2hboA 158 14.82 d.38.1.5 136319 1vclA 432 15.37 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1ajoA 214 15.92 b.29.1.2 24179 3gbtA 504 16.72 2gkeA 274 16.77 d.21.1.1,d.21.1.1 135329,135330 3kstA 306 16.96 3k85A 357 17.80 2jxwA 75 18.15 3h46O 506 18.54 1m6kA 251 19.52 e.3.1.1 78695 1yrzA 528 20.32 b.29.1.23,b.67.2.1 123948,123949 3h3nO 506 20.42 1ybiA 288 20.47 2zf5O 497 20.59 2eabA 899 20.92 2w7qA 204 21.12 3kvcA 533 21.55 2je8A 848 21.90 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 2kppA 114 21.95 3cjyA 259 23.28 1vkdA 338 23.78 b.67.2.4 108644 1at0A 145 24.31 b.86.1.1 28374 1olzA 663 24.43 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1h30A 422 25.23 b.29.1.4,b.29.1.4 76604,76605 2ihoA 293 25.61 b.42.2.1,d.3.1.18 147681,147682 3ah2A 288 25.68 2ifsA 169 26.23 1u9tA 354 26.69 e.62.1.1 119651 3ld7A 101 27.34 3lorA 160 27.42 3l6vA 370 27.48 3d7eO 505 27.49 2a2cA 478 27.99 3ep0A 170 28.31 1t9fA 187 28.39 b.42.6.1 106710 1vm9A 111 29.39 b.33.1.1 108886 3lb9A 182 29.69 3hz6A 511 29.97 1pz7A 204 31.72 b.29.1.4 95405 1ntvA 152 31.79 b.55.1.2 86168 2itmA 484 31.79 3hihA 223 31.81 2d4wA 504 32.71 3gqsA 106 33.48 1bu6O 501 33.68 c.55.1.4,c.55.1.4 33499,33500 3fvhA 237 35.02 2aaiB 262 35.91 b.42.2.1,b.42.2.1 25561,25562 2hq7A 146 35.99 b.45.1.1 136657 3l0qA 554 36.06 2f2fA 222 37.08 b.42.2.1 132810 2gf6A 135 37.08 d.38.1.1 135077 3flcO 518 37.46 3hkxA 283 38.60 3b3qE 197 38.72 b.29.1.4 154813 2ac1A 541 38.93 3me7A 170 40.83 2elaA 175 41.07 2wl1A 191 41.53 1n9bA 265 41.75 e.3.1.1 85463 3bbjA 272 42.76 3ll3A 504 42.99 3lwaA 183 43.20 1jfuA 186 44.92 c.47.1.10 62940 2yzyA 200 45.14 1kj1D 109 45.46 b.78.1.1 68639 1kkhA 317 45.65 d.14.1.5,d.58.26.3 72645,72646 1ly2A 130 46.55 g.18.1.1,g.18.1.1 74335,74336 3kcmA 154 48.24 3f6kA 685 48.44 2q4nA 166 48.87 b.60.1.8 139871 1wl8A 189 48.95 c.23.16.1 120997 2qngA 199 49.79 2f2fC 186 49.90 b.42.2.1 132812 2w1vA 276 50.44 2zpdA 190 50.46 3db5A 151 51.56 2fbeA 201 52.10 b.29.1.22 133241 2dejA 350 52.81 2ho9A 167 53.19 3gf8A 296 54.87 2qz7A 194 55.48 2fvgA 340 57.07 b.49.3.1,c.56.5.4 134201,134202 2pimA 141 57.25 3elsA 158 57.48 1v58A 241 57.75 c.47.1.9,d.17.3.1 108371,108372 1wlgA 299 58.00 b.152.1.1 114726 3h6jA 438 58.77 1ukfA 188 59.05 d.3.1.10 99488 2a13A 166 59.19 b.60.1.8 125971 1uxzA 131 59.72 b.18.1.10 100170 1mt6A 280 60.34 b.76.2.1,b.85.7.1 79446,79447 1f89A 291 60.60 d.160.1.1 64988 2eifA 136 60.75 b.34.5.2,b.40.4.5 24607,25339 3f8hA 150 61.16 1gbg 214 62.12 1rieA 129 64.39 b.33.1.1 24427 3kf3A 509 64.61 2e4qA 109 64.66 1qu0A 191 64.77 b.29.1.4 24225 3gldA 295 65.44 2erfA 209 65.91 b.29.1.4 132287 3hdcA 158 66.41 3c2uA 538 66.80 2a15A 139 66.94 d.17.4.3 125973 3gceA 121 67.11 3fveA 290 67.85 2w38A 438 68.22 3by9A 260 68.64 2f9sA 151 69.18 c.47.1.10 133168 2fhqA 141 69.81 b.45.1.1 133497 3lwgA 145 70.89 1sjgA 112 70.99 b.33.1.1 105647 3fsnA 533 71.01 3ewlA 142 71.08 3idaA 587 71.65 1ddmA 135 71.85 b.55.1.2 26993 3jvpA 572 72.31 1f5jA 199 72.60 b.29.1.11 24342 2in3A 216 73.35 1o7dD 282 74.74 2cy5A 140 74.90 b.55.1.2 131018 3hn9A 123 75.01 2d5fA 493 75.08 2qpwA 149 77.20 2hq2A 354 77.25 e.62.1.1 136656 3ezwA 526 78.45 1yllA 200 78.49 b.82.1.17 123653 2qdlA 165 79.46 3ihxA 152 80.12 1knmA 130 81.03 b.42.2.1 72781 3khyA 384 81.49 1op4A 159 81.54 b.1.6.1 93397 3fzxA 218 81.67 3fzyA 234 82.05 2p5qA 170 82.24 3bk5A 237 82.45 3fldA 153 82.52 2oxgB 124 82.78 1umwA 237 83.17 d.223.1.2,d.223.1.2 99631,99632 2phlA 397 83.81 b.82.1.2,b.82.1.2 28082,28083 3im6A 217 83.85 2bmoA 447 84.66 b.33.1.2,d.129.3.3 128804,128805 2ijaA 295 85.38 1jpcA 109 85.67 b.78.1.1 27986 2vqaA 361 85.89 1gbgA 214 85.91 b.29.1.2 24171 1r59O 505 86.04 c.55.1.4,c.55.1.4 111697,111698 3hm0A 167 86.22 1o6wA 75 87.35 b.72.1.1,b.72.1.1 81103,81104 1j1yA 136 87.85 d.38.1.5 90776 3f7xA 151 88.15