# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 8.62e-23 2pbiB 354 2.02e-22 2gnqA 336 2.50e-22 2h14A 317 2.59e-22 2qc5A 300 2.61e-22 3emhA 318 2.85e-22 2bcjB 340 5.70e-22 b.69.4.1 128289 1gotB 340 6.05e-22 b.69.4.1 27648 1a0rB 340 7.25e-22 b.69.4.1 27658 1gxrA 337 2.48e-21 b.69.4.1 70722 3frxA 319 4.76e-21 1nr0A 611 1.29e-20 b.69.4.1,b.69.4.1 86078,86079 3fm0A 345 5.70e-20 3ei4B 436 6.90e-20 1r5mA 425 2.14e-19 1l0qA 391 3.90e-19 b.1.3.1,b.69.2.3 77644,77645 3hxjA 330 4.26e-19 1q7fA 286 4.45e-19 b.68.9.1 96036 3ei3B 383 6.69e-19 3dxkC 372 6.82e-19 2ovrB 445 8.93e-19 a.158.1.1,b.69.4.1 145735,145736 1k8kC 372 1.01e-18 b.69.4.1 68308 2qxvA 361 1.15e-18 1ri6A 343 1.39e-18 b.69.11.1 97503 1yfqA 342 1.59e-18 b.69.4.2 116680 3k26A 366 1.61e-18 3iiwA 365 1.66e-18 1u4cA 349 1.87e-18 b.69.4.2 107666 1nexB 464 2.49e-18 a.158.1.1,b.69.4.1 80443,80444 3fvzA 329 3.03e-18 1p22A 435 4.87e-18 a.158.1.1,b.69.4.1 87715,87716 3i2nA 357 6.23e-18 2iaaA 390 6.31e-18 2oitA 434 6.37e-18 1pbyB 337 8.92e-18 b.69.2.2 94422 2aq5A 402 9.61e-18 1pguA 615 1.26e-17 b.69.4.1,b.69.4.1 88069,88070 1rwiA 270 1.51e-17 b.68.9.1 97987 2gc7A 386 1.64e-17 b.69.2.1 134954 3hfqA 347 1.92e-17 1jmxB 349 2.04e-17 b.69.2.2 66906 1sq9A 397 2.69e-17 b.69.4.1 105889 2agyA 361 2.86e-17 3bwsA 433 3.02e-17 2oajA 902 3.19e-17 2hesX 330 3.53e-17 3dsmA 328 3.79e-17 3c5mA 396 4.03e-17 2w18A 356 4.17e-17 3dw8B 447 4.17e-17 1pjxA 314 5.87e-17 b.68.6.1 104167 2ad6A 571 6.41e-17 b.70.1.1 126568 3cfsB 414 7.48e-17 3acpA 417 7.57e-17 1kv9A 668 9.42e-17 a.3.1.6,b.70.1.1 73056,73057 3e5zA 296 9.42e-17 1w6sA 599 1.05e-16 b.70.1.1 114284 1yiqA 689 1.11e-16 3gfcA 425 1.12e-16 3c99A 432 1.12e-16 2ojhA 297 1.14e-16 2pm7B 297 1.22e-16 3dwlC 377 1.88e-16 2hqsA 415 1.93e-16 b.68.4.1,c.51.2.1 136662,136663 2oizA 361 2.03e-16 1jofA 365 2.13e-16 b.69.10.1 71775 1g72A 573 2.47e-16 b.70.1.1 27680 1lrwA 600 2.66e-16 b.70.1.1 91111 2dg1A 333 2.77e-16 b.68.6.1 131493 2vduB 450 2.88e-16 3c75H 426 3.18e-16 2madH 373 5.03e-16 b.69.2.1 27639 1kb0A 677 6.93e-16 a.3.1.6,b.70.1.1 68378,68379 3greA 437 7.86e-16 3llpA 493 9.14e-16 3f3fA 351 1.38e-15 3li5A 314 2.04e-15 1s4uX 407 2.71e-15 b.69.4.1 112027 3ei3A 1158 4.08e-15 3fgbA 361 4.52e-15 1k32A 1045 6.35e-15 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2j04B 524 7.88e-15 3dr2A 305 8.24e-15 3hrpA 409 1.07e-14 2p4oA 306 1.76e-14 b.68.6.3 149216 2ghsA 326 2.11e-14 b.68.6.1 135209 3e0cA 1140 2.41e-14 2bklA 695 6.02e-14 3g4eA 297 8.08e-14 2qe8A 343 9.41e-14 3i1cA 324 9.53e-14 3li3A 314 1.02e-13 2gopA 347 1.38e-13 3li4A 314 1.58e-13 1cruA 454 2.61e-13 b.68.2.1 27617 1npeA 267 3.05e-13 b.68.5.1 92032 1orvA 728 7.82e-13 b.70.3.1,c.69.1.24 87354,87355 1yr2A 741 1.35e-12 1xfdA 723 3.18e-12 b.70.3.1,c.69.1.24 115251,115252 1mdaH 368 1.77e-11 b.69.2.1 27637 1v04A 355 2.80e-11 b.68.6.2 100240 1h2wA 710 4.02e-11 b.69.7.1,c.69.1.4 76596,76597 2fp8A 322 6.77e-11 3dasA 347 1.30e-09 3kyaA 496 1.93e-09 2ismA 352 6.01e-09 2z3zA 706 8.44e-08 3elqA 571 8.87e-08 2g8sA 353 1.19e-06 2be1A 339 1.69e-06 2hu5A 582 2.07e-06 b.69.7.2,c.69.1.33 136763,136764 2p9wA 334 2.63e-06 2d5lA 706 4.45e-06 2iwaA 266 4.93e-06 1o6gA 710 1.29e-05 b.69.7.1,c.69.1.4 81087,81088 3hacA 728 4.87e-05 3g0bA 740 7.48e-05 2wg3C 463 0.000102 1k3iA 656 0.000159 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1zgkA 308 0.000547 b.68.11.1 145998 3gc3B 363 0.000940 1x2jA 316 0.001901 b.68.11.1 121643 2fluX 308 0.002036 b.68.11.1 133750 2vpjA 301 0.003208 2qr5A 582 0.004866 b.69.7.2,c.69.1.33 151278,151279 2eceA 462 0.006076 3ii7A 306 0.006108 1utcA 363 0.01961 a.118.1.4,b.69.6.1 99914,99915 3b7fA 394 0.03185 3hx6A 570 0.03456 3c9zA 258 0.04677 2b5nA 323 0.05740 2bibA 547 0.06711 b.109.1.1,d.157.1.8 128581,128582 2wftA 458 0.09100 2v05A 311 0.1026 2pooA 355 0.1138 b.68.3.1 27626 1ofzA 312 0.1173 b.68.8.1 86978 1jtdB 273 0.1212 b.69.5.2 67265 1h6lA 353 0.1635 b.68.3.1 60687 2cn3A 737 0.2181 2wg4B 457 0.2397 1qxmA 300 0.2459 b.42.2.1,b.42.2.1 96533,96534 2wozA 318 0.3118 2vw2A 697 0.3174 2sliA 679 0.3516 b.29.1.9,b.68.1.1 24274,27611 2uvkA 357 0.3796 2zwaA 695 0.6421 3kciA 389 0.6877 2bf6A 449 0.7011 2z8rA 591 0.8707 2w20A 471 0.9179 2jkbA 686 1.025 1zi0A 307 1.071 3hxrA 761 1.114 2aukA 190 1.124 1sqjA 789 1.163 b.69.13.1,b.69.13.1 105918,105919 3ah2A 288 1.168 1q47A 495 1.261 b.69.12.1 104532 2ebsA 789 1.263 b.69.13.1,b.69.13.1 146772,146773 3c12A 138 1.291 3h7nA 729 1.302 1xipA 388 1.556 b.69.14.1 115360 1suuA 312 1.957 b.68.10.1 99006 2h0bA 184 2.544 1so7A 382 2.934 b.68.1.1 112106 3kf5A 512 3.294 3b3qE 197 4.033 b.29.1.4 154813 3lv4A 456 4.570 1wl7A 312 4.703 b.67.2.1 120996 3f7fA 729 4.870 1f5fA 205 5.016 b.29.1.4 24222 1pz7A 204 5.556 b.29.1.4 95405 3cu9A 314 5.985 1kj1D 109 6.362 b.78.1.1 68639 2ww5A 468 6.791 1xksA 450 6.956 b.69.14.1 115422 3kstA 306 7.188 3c7fA 487 7.397 1wp5A 323 7.602 b.68.10.1 114780 3kptA 355 7.678 1qu0A 191 8.064 b.29.1.4 24225 3gbtA 504 8.641 2dpfA 115 8.673 2zuxA 591 8.675 2zf5O 497 8.961 3a0eA 110 9.233 1jpcA 109 9.461 b.78.1.1 27986 2w5nA 367 9.945 2iwkA 642 10.11 1fwxA 595 11.15 b.6.1.4,b.69.3.1 60069,60070 2fbeA 201 11.45 b.29.1.22 133241 2r16A 182 11.71 1gyhA 318 11.98 b.67.2.1 70757 2ihoA 293 12.41 b.42.2.1,d.3.1.18 147681,147682 3dzwA 109 12.66 1ybiA 288 12.79 1knmA 130 13.07 b.42.2.1 72781 3ibzA 191 13.19 2itmA 484 13.43 1zvtA 256 13.55 3gg4A 554 14.17 3bodA 178 14.42 3kb5A 193 14.43 2in0A 139 14.49 3h46O 506 14.65 3h3nO 506 14.71 2d4wA 504 14.88 3l6vA 370 14.95 3hikA 237 16.31 2ichA 335 16.60 b.176.1.1 147602 3d5yA 314 16.61 3lhnA 126 16.95 1v58A 241 17.08 c.47.1.9,d.17.3.1 108371,108372 2ww8A 893 17.09 2e4qA 109 17.65 3malA 199 17.80 1iwlA 182 17.82 b.125.1.1 83757 2qqjA 325 18.18 3ll3A 504 18.78 1at0A 145 19.01 b.86.1.1 28374 1w0pA 781 19.08 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1sz6B 263 19.42 b.42.2.1,b.42.2.1 112172,112173 3d7eO 505 19.98 1xd5A 112 20.05 b.78.1.1 115155 3d60A 314 20.27 1bfgA 146 20.32 b.42.1.1 25485 2zr1B 267 20.32 2o62A 270 20.48 b.60.1.9,b.60.1.9 148622,148623 1wlgA 299 20.90 b.152.1.1 114726 2ej8A 160 21.00 1m6kA 251 21.73 e.3.1.1 78695 3f6kA 685 22.75 3hihA 223 23.05 1hnfA 182 23.60 b.1.1.1,b.1.1.3 19741,21680 2ac1A 541 23.84 3hz6A 511 24.12 3ifrA 508 24.74 1sr4A 206 24.91 b.42.2.1 105948 2ayhA 214 25.16 b.29.1.2 24172 2j8gA 339 25.39 b.109.1.1,c.1.8.8 147915,147916 2eabA 899 25.52 1r59O 505 26.17 c.55.1.4,c.55.1.4 111697,111698 2gkeA 274 26.35 d.21.1.1,d.21.1.1 135329,135330 3fvhA 237 26.89 1t9fA 187 26.93 b.42.6.1 106710 2uytA 489 27.38 3ef2A 293 28.78 3ezwA 526 28.83 1gbg 214 28.98 2kppA 114 29.88 1od5A 492 29.92 b.82.1.2,b.82.1.2 86832,86833 3d61A 314 30.35 1ddmA 135 30.88 b.55.1.2 26993 2jxwA 75 31.42 1bu6O 501 31.48 c.55.1.4,c.55.1.4 33499,33500 1gydB 315 33.04 b.67.2.1 70751 1ajoA 214 33.04 b.29.1.2 24179 1vclA 432 33.11 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 2gk3A 256 33.55 c.23.16.9 147123 3gceA 121 34.24 1shyB 551 34.29 b.69.12.1,g.16.2.1 105565,105566 3d89A 157 34.54 2aaiB 262 35.53 b.42.2.1,b.42.2.1 25561,25562 3lorA 160 35.57 1mkeA 152 36.57 b.55.1.4 79231 1zxuA 217 36.85 d.23.1.2 125796 3flcO 518 37.14 2wl1A 191 38.14 1h8gA 95 38.45 b.109.1.1 65735 3flpA 217 38.49 1s1dA 331 38.50 b.67.3.1 98344 2zpdA 190 38.68 3db5A 151 38.85 1o6wA 75 38.99 b.72.1.1,b.72.1.1 81103,81104 3l0qA 554 39.46 3cjyA 259 39.58 2r19A 159 39.74 3kf3A 509 39.85 3me7A 170 41.02 3ep0A 170 41.29 2f6eA 127 41.48 2h6lA 146 42.60 d.290.1.3 136197 2pz4A 239 42.65 1t3bA 211 42.82 c.47.1.9,d.17.3.1 106341,106342 1m2tB 263 43.25 b.42.2.1,b.42.2.1 84762,84763 3gqsA 106 43.25 2w7qA 204 43.65 2k7pA 188 44.05 1uv4A 293 45.79 b.67.2.1 119705 2q4mA 217 46.07 d.23.1.2 139870 2i7fA 108 46.08 2fvgA 340 46.17 b.49.3.1,c.56.5.4 134201,134202 3by9A 260 46.57 1w8oA 601 47.14 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1ntvA 152 47.18 b.55.1.2 86168 1umwA 237 47.63 d.223.1.2,d.223.1.2 99631,99632 2z4iA 233 48.71 3htnA 149 48.76 1vavA 222 49.62 b.29.1.18 108472 1vm9A 111 50.67 b.33.1.1 108886 1rhfA 182 50.91 b.1.1.1,b.1.1.4 97469,97470 3idaA 587 51.35 2f2fA 222 51.50 b.42.2.1 132810 2bgzA 299 51.78 2b7yA 182 52.73 2w40A 503 52.83 3hkxA 283 53.18 3f62B 158 55.08 3l48A 94 55.67 1rwrA 301 57.75 b.80.1.11 97990 2ayh 214 57.91 1vzyA 291 60.83 d.193.1.1,g.81.1.1 114042,114043 3c3vA 510 60.94 1vkdA 338 60.99 b.67.2.4 108644 2yugA 155 62.44 2elaA 175 62.77 2d5fA 493 63.33 2wjsA 608 63.52 2f9sA 151 64.25 c.47.1.10 133168 2q4nA 166 64.36 b.60.1.8 139871 2w68A 195 65.71 3knbA 100 66.70 2f15A 96 67.65 b.1.18.21 146993 2kkqA 116 67.77 3im6A 217 67.77 3ckaA 320 67.84 3kvcA 533 68.04 3fzyA 234 68.79 3ld7A 101 68.99 2bwrA 401 69.04 2otnA 308 70.02 2oy7A 320 70.10 3erwA 145 70.52 3elnA 200 70.70 b.82.1.19 158185 2h7dA 101 71.39 1fhgA 154 71.75 b.1.1.4 21706 3kcmA 154 72.27 1p63A 144 72.54 b.42.1.1 94153 1gqzA 274 72.56 d.21.1.1,d.21.1.1 83311,83312 3a07A 118 73.15 2pieA 138 73.67 b.26.1.2 149508 1iwmA 186 76.37 b.125.1.2 83758 2k7qA 191 77.59 3hn9A 123 79.30 2a15A 139 79.36 d.17.4.3 125973 3dsoA 74 79.92 3fosA 214 80.43 2gf6A 135 80.96 d.38.1.1 135077 1e30A 155 81.51 b.6.1.1 23016 2k0qA 74 82.41 1sjgA 112 82.88 b.33.1.1 105647 3fldA 153 83.05 3b8fA 142 83.15 3dqyA 106 84.32 2ai4A 119 84.79 b.6.1.7 126816 3dxeA 140 84.91 3ge2A 130 84.97 3a24A 641 85.34 2qpzA 103 85.38 3silA 379 85.38 b.68.1.1 27542 3gf8A 296 86.02 3ejxA 317 86.35 3irgA 100 87.25 2b5hA 200 88.05 b.82.1.19 127894 1wcqA 601 88.08 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 3k85A 357 88.47 3ihxA 152 89.66 1f89A 291 89.97 d.160.1.1 64988