# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 1.70e-22 2qc5A 300 7.39e-22 2pbiB 354 1.38e-21 1a0rB 340 3.15e-21 b.69.4.1 27658 2gnqA 336 3.83e-21 3emhA 318 4.09e-21 2bcjB 340 4.22e-21 b.69.4.1 128289 2h14A 317 4.24e-21 1gotB 340 5.24e-21 b.69.4.1 27648 1gxrA 337 5.82e-21 b.69.4.1 70722 3frxA 319 5.81e-20 1nr0A 611 6.43e-20 b.69.4.1,b.69.4.1 86078,86079 3ei4B 436 9.66e-20 3fm0A 345 1.42e-19 1r5mA 425 5.25e-19 1yfqA 342 8.87e-19 b.69.4.2 116680 3ei3B 383 1.15e-18 3dxkC 372 1.57e-18 2qxvA 361 1.57e-18 1q7fA 286 1.98e-18 b.68.9.1 96036 1ri6A 343 2.06e-18 b.69.11.1 97503 1nexB 464 2.29e-18 a.158.1.1,b.69.4.1 80443,80444 1k8kC 372 2.38e-18 b.69.4.1 68308 3iiwA 365 2.70e-18 1u4cA 349 2.75e-18 b.69.4.2 107666 3k26A 366 2.89e-18 2oitA 434 2.90e-18 2ovrB 445 3.48e-18 a.158.1.1,b.69.4.1 145735,145736 3hxjA 330 3.70e-18 1l0qA 391 3.72e-18 b.1.3.1,b.69.2.3 77644,77645 3fvzA 329 4.98e-18 3i2nA 357 8.51e-18 2oajA 902 9.34e-18 1p22A 435 1.04e-17 a.158.1.1,b.69.4.1 87715,87716 2iaaA 390 1.34e-17 2aq5A 402 1.55e-17 1pguA 615 2.10e-17 b.69.4.1,b.69.4.1 88069,88070 1rwiA 270 2.40e-17 b.68.9.1 97987 1pbyB 337 2.80e-17 b.69.2.2 94422 3hfqA 347 2.82e-17 1sq9A 397 3.00e-17 b.69.4.1 105889 3dw8B 447 3.20e-17 2w18A 356 3.54e-17 2agyA 361 3.58e-17 2ad6A 571 3.91e-17 b.70.1.1 126568 2hesX 330 4.19e-17 2gc7A 386 5.88e-17 b.69.2.1 134954 3bwsA 433 5.90e-17 1w6sA 599 6.31e-17 b.70.1.1 114284 3c5mA 396 6.64e-17 1jmxB 349 7.32e-17 b.69.2.2 66906 1yiqA 689 8.38e-17 3c99A 432 1.03e-16 3dsmA 328 1.11e-16 2vduB 450 1.23e-16 3cfsB 414 1.26e-16 2pm7B 297 1.43e-16 3acpA 417 1.53e-16 3e5zA 296 1.55e-16 1kv9A 668 1.78e-16 a.3.1.6,b.70.1.1 73056,73057 1pjxA 314 1.82e-16 b.68.6.1 104167 2hqsA 415 1.87e-16 b.68.4.1,c.51.2.1 136662,136663 2ojhA 297 1.88e-16 1lrwA 600 2.36e-16 b.70.1.1 91111 1g72A 573 2.43e-16 b.70.1.1 27680 3dwlC 377 2.89e-16 3gfcA 425 3.01e-16 2dg1A 333 4.09e-16 b.68.6.1 131493 3greA 437 5.74e-16 2madH 373 5.87e-16 b.69.2.1 27639 3llpA 493 7.14e-16 1kb0A 677 7.95e-16 a.3.1.6,b.70.1.1 68378,68379 1jofA 365 8.36e-16 b.69.10.1 71775 3ei3A 1158 1.12e-15 3c75H 426 1.18e-15 3f3fA 351 1.31e-15 2oizA 361 1.35e-15 2j04B 524 1.40e-15 1s4uX 407 2.76e-15 b.69.4.1 112027 3li5A 314 3.40e-15 1k32A 1045 4.20e-15 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3hrpA 409 5.36e-15 3e0cA 1140 6.37e-15 3dr2A 305 7.18e-15 2bklA 695 1.54e-14 3fgbA 361 2.25e-14 2ghsA 326 2.40e-14 b.68.6.1 135209 2p4oA 306 4.24e-14 b.68.6.3 149216 1cruA 454 8.44e-14 b.68.2.1 27617 2gopA 347 1.31e-13 2qe8A 343 1.37e-13 3g4eA 297 1.57e-13 3li4A 314 2.30e-13 3i1cA 324 2.44e-13 3li3A 314 2.76e-13 1orvA 728 3.37e-13 b.70.3.1,c.69.1.24 87354,87355 1yr2A 741 6.33e-13 1xfdA 723 1.20e-12 b.70.3.1,c.69.1.24 115251,115252 1npeA 267 1.30e-12 b.68.5.1 92032 1mdaH 368 2.45e-11 b.69.2.1 27637 1h2wA 710 2.88e-11 b.69.7.1,c.69.1.4 76596,76597 1v04A 355 4.37e-11 b.68.6.2 100240 2fp8A 322 4.37e-11 3dasA 347 1.35e-09 3kyaA 496 2.50e-09 2ismA 352 3.71e-09 2z3zA 706 5.57e-08 3elqA 571 2.24e-07 2p9wA 334 1.14e-06 2g8sA 353 1.34e-06 2d5lA 706 1.57e-06 2hu5A 582 2.20e-06 b.69.7.2,c.69.1.33 136763,136764 2be1A 339 3.85e-06 2iwaA 266 4.67e-06 1o6gA 710 9.90e-06 b.69.7.1,c.69.1.4 81087,81088 3g0bA 740 6.75e-05 3hacA 728 9.76e-05 1k3iA 656 0.000210 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2wg3C 463 0.000389 1zgkA 308 0.000457 b.68.11.1 145998 3gc3B 363 0.002211 1x2jA 316 0.002220 b.68.11.1 121643 2vpjA 301 0.002614 2fluX 308 0.002767 b.68.11.1 133750 3ii7A 306 0.003209 2eceA 462 0.007922 2qr5A 582 0.01051 b.69.7.2,c.69.1.33 151278,151279 3hx6A 570 0.01052 2b5nA 323 0.02306 2zwaA 695 0.02766 1utcA 363 0.04001 a.118.1.4,b.69.6.1 99914,99915 2bibA 547 0.08348 b.109.1.1,d.157.1.8 128581,128582 2sliA 679 0.08870 b.29.1.9,b.68.1.1 24274,27611 2wozA 318 0.1001 3kciA 389 0.1013 3b7fA 394 0.1052 2v05A 311 0.1552 1h6lA 353 0.1554 b.68.3.1 60687 2pooA 355 0.1680 b.68.3.1 27626 1jtdB 273 0.2050 b.69.5.2 67265 2vw2A 697 0.2173 2uvkA 357 0.2624 3c9zA 258 0.2757 2wftA 458 0.2898 1xipA 388 0.3449 b.69.14.1 115360 2jkbA 686 0.4172 2w20A 471 0.4759 1ofzA 312 0.6486 b.68.8.1 86978 3hxrA 761 0.6579 2bf6A 449 1.151 2wg4B 457 1.243 3h7nA 729 1.344 2cn3A 737 1.571 1sqjA 789 1.606 b.69.13.1,b.69.13.1 105918,105919 1zi0A 307 1.727 1q47A 495 1.956 b.69.12.1 104532 2aukA 190 2.031 3kptA 355 2.167 2ww5A 468 2.217 1wl7A 312 2.234 b.67.2.1 120996 1qxmA 300 2.273 b.42.2.1,b.42.2.1 96533,96534 1so7A 382 2.724 b.68.1.1 112106 3lv4A 456 3.237 3cu9A 314 3.282 2z8rA 591 3.373 1suuA 312 3.469 b.68.10.1 99006 2ebsA 789 3.687 b.69.13.1,b.69.13.1 146772,146773 3c12A 138 3.964 3ah2A 288 4.427 1f5fA 205 4.994 b.29.1.4 24222 2h0bA 184 5.020 1xksA 450 5.714 b.69.14.1 115422 3d61A 314 6.511 3d5yA 314 7.026 2ww8A 893 7.036 3f7fA 729 7.385 2w5nA 367 7.418 3hikA 237 8.084 3d60A 314 8.266 2in0A 139 8.820 1shyB 551 8.848 b.69.12.1,g.16.2.1 105565,105566 1pz7A 204 9.498 b.29.1.4 95405 3kstA 306 9.860 3b3qE 197 9.912 b.29.1.4 154813 1iwlA 182 10.18 b.125.1.1 83757 1wp5A 323 10.28 b.68.10.1 114780 1uv4A 293 11.08 b.67.2.1 119705 1ybiA 288 11.31 2iwkA 642 11.95 1qu0A 191 12.88 b.29.1.4 24225 3ibzA 191 12.98 1kj1D 109 13.28 b.78.1.1 68639 2o62A 270 14.49 b.60.1.9,b.60.1.9 148622,148623 3hihA 223 15.24 1jpcA 109 15.30 b.78.1.1 27986 3kf5A 512 16.09 3c7fA 487 16.31 3l6vA 370 17.05 3fvhA 237 17.37 2ihoA 293 18.31 b.42.2.1,d.3.1.18 147681,147682 1gyhA 318 18.36 b.67.2.1 70757 1v58A 241 18.38 c.47.1.9,d.17.3.1 108371,108372 2j04A 588 18.98 3gbtA 504 19.54 1fwxA 595 19.77 b.6.1.4,b.69.3.1 60069,60070 1w0pA 781 20.71 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3kb5A 193 21.54 2zpdA 190 21.88 2fbeA 201 22.38 b.29.1.22 133241 2hboA 158 22.39 d.38.1.5 136319 2jxwA 75 22.62 2zf5O 497 22.87 3ifrA 508 23.38 3gg4A 554 23.61 2aaiB 262 24.14 b.42.2.1,b.42.2.1 25561,25562 2uytA 489 24.16 2gkeA 274 24.39 d.21.1.1,d.21.1.1 135329,135330 3hz6A 511 24.47 2zuxA 591 24.79 2w7qA 204 24.83 1gydB 315 25.30 b.67.2.1 70751 1vclA 432 26.66 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3f6kA 685 26.70 2itmA 484 26.75 3h3nO 506 27.03 3h46O 506 27.29 2e4qA 109 28.25 1xd5A 112 28.49 b.78.1.1 115155 1mkeA 152 28.68 b.55.1.4 79231 1zvtA 256 28.88 1vm9A 111 29.08 b.33.1.1 108886 2j8gA 339 29.13 b.109.1.1,c.1.8.8 147915,147916 3dzwA 109 29.62 1jfuA 186 29.90 c.47.1.10 62940 1yrzA 528 30.48 b.29.1.23,b.67.2.1 123948,123949 1w8oA 601 31.86 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3malA 199 32.01 1umwA 237 32.38 d.223.1.2,d.223.1.2 99631,99632 3k85A 357 32.84 2ayhA 214 33.02 b.29.1.2 24172 2dpfA 115 33.59 1m6kA 251 34.06 e.3.1.1 78695 2ifsA 169 34.15 3lhnA 126 34.28 1s1dA 331 35.22 b.67.3.1 98344 1at0A 145 35.32 b.86.1.1 28374 3fzyA 234 35.33 3hkxA 283 36.09 3bodA 178 36.14 1ajoA 214 36.77 b.29.1.2 24179 2erfA 209 37.42 b.29.1.4 132287 3a0eA 110 37.53 2d4wA 504 37.75 2z4iA 233 39.89 2ej8A 160 40.03 3gceA 121 41.14 2f2fC 186 41.14 b.42.2.1 132812 1knmA 130 41.58 b.42.2.1 72781 2eabA 899 43.45 2ichA 335 43.69 b.176.1.1 147602 3ll3A 504 44.13 2ac1A 541 44.27 1o6wA 75 45.48 b.72.1.1,b.72.1.1 81103,81104 1vkdA 338 45.54 b.67.2.4 108644 1wlgA 299 45.68 b.152.1.1 114726 3me7A 170 46.38 3h6jA 438 46.60 3k1wA 341 46.77 3idaA 587 46.88 3fnsA 332 47.16 1t9fA 187 47.25 b.42.6.1 106710 3lorA 160 47.94 3d7eO 505 49.22 2f2fA 222 49.26 b.42.2.1 132810 1ddmA 135 49.79 b.55.1.2 26993 3eebA 209 49.84 1bfgA 146 49.92 b.42.1.1 25485 2kppA 114 50.14 3ewlA 142 51.09 3flcO 518 51.10 3ge2A 130 53.49 1f89A 291 53.86 d.160.1.1 64988 2w1vA 276 54.77 2zr1B 267 55.05 1uypA 432 55.37 b.29.1.19,b.67.2.3 100176,100177 3by9A 260 55.64 2pz4A 239 57.38 1m2tB 263 58.28 b.42.2.1,b.42.2.1 84762,84763 3silA 379 58.46 b.68.1.1 27542 3l0qA 554 58.49 2wl1A 191 59.13 1e30A 155 59.33 b.6.1.1 23016 3gleA 295 59.73 2hq7A 146 60.05 b.45.1.1 136657 3ld7A 101 60.48 3hdcA 158 61.20 1o7dD 282 62.33 1h8gA 95 62.69 b.109.1.1 65735 3lb9A 182 63.18 1sr4A 206 63.72 b.42.2.1 105948 2je8A 848 64.07 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1h09A 338 64.46 b.109.1.1,c.1.8.8 83420,83421 2ijaA 295 66.14 3g6zA 341 67.22 2r19A 159 67.61 1r59O 505 67.84 c.55.1.4,c.55.1.4 111697,111698 1bu6O 501 68.67 c.55.1.4,c.55.1.4 33499,33500 3gldA 295 68.78 1rwrA 301 69.21 b.80.1.11 97990 2f6eA 127 69.36 2bt9A 90 69.39 3cjyA 259 70.09 3lwaA 183 70.31 3kcmA 154 71.14 2wjsA 608 71.47 1olzA 663 71.76 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1xvqA 175 72.27 c.47.1.10 116094 2fvgA 340 72.51 b.49.3.1,c.56.5.4 134201,134202 2a2cA 478 73.42 1sz6B 263 73.67 b.42.2.1,b.42.2.1 112172,112173 3hlkA 446 76.53 2gf6A 135 77.06 d.38.1.1 135077 1uxzA 131 77.19 b.18.1.10 100170 3ep0A 170 77.61 1ntvA 152 77.73 b.55.1.2 86168 2qqjA 325 78.82 3flpA 217 79.67 3gqsA 106 80.90 3b8fA 142 82.25 1h30A 422 82.26 b.29.1.4,b.29.1.4 76604,76605 1u6lA 149 82.32 d.32.1.7 113067 1rhfA 182 82.58 b.1.1.1,b.1.1.4 97469,97470 2ho9A 167 83.81 1y7mA 164 84.24 b.160.1.1,d.7.1.1 122696,122697 1n9bA 265 85.12 e.3.1.1 85463 2pimA 141 85.49 2vqaA 361 85.76 3ihxA 152 86.40 2dejA 350 87.89 1wl8A 189 88.93 c.23.16.1 120997 2i7fA 108 90.00