# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 5.28e-25 2pbiB 354 3.40e-24 2qc5A 300 3.95e-24 2bcjB 340 7.24e-24 b.69.4.1 128289 1a0rB 340 7.63e-24 b.69.4.1 27658 2gnqA 336 8.47e-24 3emhA 318 8.52e-24 2h14A 317 9.94e-24 1gotB 340 1.62e-23 b.69.4.1 27648 1gxrA 337 1.64e-23 b.69.4.1 70722 1nr0A 611 1.99e-22 b.69.4.1,b.69.4.1 86078,86079 3frxA 319 2.00e-22 3ei4B 436 2.15e-22 3fm0A 345 3.21e-22 1r5mA 425 1.69e-21 1yfqA 342 2.64e-21 b.69.4.2 116680 3ei3B 383 2.80e-21 2qxvA 361 3.63e-21 3iiwA 365 6.77e-21 3dxkC 372 7.06e-21 2oitA 434 7.32e-21 3k26A 366 8.64e-21 1ri6A 343 9.49e-21 b.69.11.1 97503 1k8kC 372 9.61e-21 b.69.4.1 68308 1nexB 464 9.78e-21 a.158.1.1,b.69.4.1 80443,80444 1u4cA 349 1.22e-20 b.69.4.2 107666 1q7fA 286 1.27e-20 b.68.9.1 96036 2ovrB 445 1.41e-20 a.158.1.1,b.69.4.1 145735,145736 3fvzA 329 1.69e-20 3hxjA 330 2.24e-20 3i2nA 357 3.03e-20 1l0qA 391 3.06e-20 b.1.3.1,b.69.2.3 77644,77645 1p22A 435 4.22e-20 a.158.1.1,b.69.4.1 87715,87716 2oajA 902 5.07e-20 2iaaA 390 5.17e-20 2aq5A 402 5.18e-20 1pguA 615 8.81e-20 b.69.4.1,b.69.4.1 88069,88070 2agyA 361 1.05e-19 1pbyB 337 1.11e-19 b.69.2.2 94422 3dw8B 447 1.38e-19 1sq9A 397 1.59e-19 b.69.4.1 105889 1rwiA 270 1.64e-19 b.68.9.1 97987 3hfqA 347 1.67e-19 2hesX 330 1.80e-19 2ad6A 571 2.60e-19 b.70.1.1 126568 2w18A 356 2.64e-19 1yiqA 689 2.74e-19 2gc7A 386 2.86e-19 b.69.2.1 134954 1w6sA 599 3.02e-19 b.70.1.1 114284 3bwsA 433 3.29e-19 3c99A 432 4.46e-19 1jmxB 349 4.55e-19 b.69.2.2 66906 3c5mA 396 4.69e-19 3cfsB 414 4.90e-19 3dsmA 328 5.28e-19 2vduB 450 5.65e-19 2pm7B 297 7.42e-19 1kv9A 668 9.02e-19 a.3.1.6,b.70.1.1 73056,73057 2hqsA 415 1.01e-18 b.68.4.1,c.51.2.1 136662,136663 2ojhA 297 1.18e-18 3acpA 417 1.52e-18 1lrwA 600 1.68e-18 b.70.1.1 91111 1g72A 573 1.87e-18 b.70.1.1 27680 3e5zA 296 1.96e-18 3gfcA 425 2.35e-18 3dwlC 377 2.52e-18 1pjxA 314 2.65e-18 b.68.6.1 104167 3greA 437 2.67e-18 2dg1A 333 3.04e-18 b.68.6.1 131493 2madH 373 3.11e-18 b.69.2.1 27639 3ei3A 1158 5.33e-18 3llpA 493 5.93e-18 1kb0A 677 7.12e-18 a.3.1.6,b.70.1.1 68378,68379 1jofA 365 7.43e-18 b.69.10.1 71775 3f3fA 351 7.92e-18 2j04B 524 9.29e-18 3c75H 426 1.01e-17 2oizA 361 1.14e-17 1s4uX 407 3.22e-17 b.69.4.1 112027 3e0cA 1140 3.92e-17 3li5A 314 5.01e-17 1k32A 1045 6.43e-17 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3hrpA 409 1.11e-16 2bklA 695 1.38e-16 3dr2A 305 1.80e-16 2ghsA 326 3.40e-16 b.68.6.1 135209 3fgbA 361 4.43e-16 1cruA 454 9.35e-16 b.68.2.1 27617 2p4oA 306 1.36e-15 b.68.6.3 149216 2gopA 347 2.35e-15 2qe8A 343 3.13e-15 1orvA 728 4.43e-15 b.70.3.1,c.69.1.24 87354,87355 3g4eA 297 5.44e-15 1yr2A 741 8.14e-15 3li4A 314 1.06e-14 3i1cA 324 1.73e-14 3li3A 314 1.93e-14 1xfdA 723 2.01e-14 b.70.3.1,c.69.1.24 115251,115252 1npeA 267 1.15e-13 b.68.5.1 92032 1h2wA 710 4.47e-13 b.69.7.1,c.69.1.4 76596,76597 1mdaH 368 8.59e-13 b.69.2.1 27637 1v04A 355 1.86e-12 b.68.6.2 100240 2fp8A 322 3.45e-12 3dasA 347 1.50e-10 3kyaA 496 1.94e-10 2ismA 352 4.30e-10 2z3zA 706 2.99e-09 3elqA 571 4.14e-08 2d5lA 706 1.58e-07 2hu5A 582 2.24e-07 b.69.7.2,c.69.1.33 136763,136764 2g8sA 353 3.79e-07 2p9wA 334 5.81e-07 2be1A 339 6.88e-07 1o6gA 710 1.11e-06 b.69.7.1,c.69.1.4 81087,81088 2iwaA 266 1.37e-06 3g0bA 740 1.48e-05 3hacA 728 3.58e-05 2wg3C 463 8.49e-05 1k3iA 656 0.000116 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1zgkA 308 0.000265 b.68.11.1 145998 2vpjA 301 0.000952 1x2jA 316 0.001562 b.68.11.1 121643 3gc3B 363 0.002037 2fluX 308 0.002201 b.68.11.1 133750 3ii7A 306 0.003023 3hx6A 570 0.003638 2qr5A 582 0.003939 b.69.7.2,c.69.1.33 151278,151279 2eceA 462 0.005122 2zwaA 695 0.01773 2sliA 679 0.03230 b.29.1.9,b.68.1.1 24274,27611 2b5nA 323 0.03812 1utcA 363 0.04813 a.118.1.4,b.69.6.1 99914,99915 2wozA 318 0.1004 2vw2A 697 0.1212 1h6lA 353 0.1285 b.68.3.1 60687 3kciA 389 0.1305 2pooA 355 0.1327 b.68.3.1 27626 2wftA 458 0.1358 2uvkA 357 0.1447 3b7fA 394 0.1581 2bibA 547 0.1616 b.109.1.1,d.157.1.8 128581,128582 3c9zA 258 0.1620 2jkbA 686 0.2160 2w20A 471 0.3513 2v05A 311 0.3950 1xipA 388 0.4751 b.69.14.1 115360 1jtdB 273 0.4856 b.69.5.2 67265 3hxrA 761 0.5486 2bf6A 449 0.8024 2wg4B 457 0.9317 1ofzA 312 1.129 b.68.8.1 86978 2aukA 190 1.383 3h7nA 729 1.436 3kptA 355 1.691 1zi0A 307 1.760 3lv4A 456 1.867 1wl7A 312 2.081 b.67.2.1 120996 2cn3A 737 2.310 2ww5A 468 3.168 1so7A 382 3.218 b.68.1.1 112106 2w5nA 367 3.257 1q47A 495 3.322 b.69.12.1 104532 1suuA 312 3.533 b.68.10.1 99006 2ww8A 893 4.281 3cu9A 314 4.475 2in0A 139 5.198 3c12A 138 5.601 1sqjA 789 5.661 b.69.13.1,b.69.13.1 105918,105919 1f5fA 205 5.739 b.29.1.4 24222 1qxmA 300 5.836 b.42.2.1,b.42.2.1 96533,96534 1wp5A 323 6.258 b.68.10.1 114780 3d5yA 314 6.822 3d60A 314 7.041 2h0bA 184 7.356 1vclA 432 7.800 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3ah2A 288 7.914 1xksA 450 8.083 b.69.14.1 115422 1shyB 551 8.250 b.69.12.1,g.16.2.1 105565,105566 3ibzA 191 8.637 3d61A 314 9.033 1uv4A 293 9.102 b.67.2.1 119705 2z8rA 591 9.529 2o62A 270 10.95 b.60.1.9,b.60.1.9 148622,148623 2hboA 158 11.77 d.38.1.5 136319 1w0pA 781 12.36 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2ebsA 789 13.65 b.69.13.1,b.69.13.1 146772,146773 2ayhA 214 13.93 b.29.1.2 24172 1pz7A 204 14.45 b.29.1.4 95405 3c7fA 487 14.64 1ajoA 214 15.78 b.29.1.2 24179 3hikA 237 15.78 2iwkA 642 15.91 2j04A 588 16.58 3malA 199 17.15 3gldA 295 17.43 1ybiA 288 17.49 2uytA 489 17.59 3b3qE 197 17.63 b.29.1.4 154813 3f7fA 729 17.82 3kb5A 193 18.45 1w8oA 601 20.00 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3l6vA 370 20.06 1v58A 241 20.69 c.47.1.9,d.17.3.1 108371,108372 1jfuA 186 20.92 c.47.1.10 62940 3gleA 295 20.99 1qu0A 191 21.18 b.29.1.4 24225 3k85A 357 21.77 3gbtA 504 22.16 1fwxA 595 22.35 b.6.1.4,b.69.3.1 60069,60070 1mkeA 152 22.47 b.55.1.4 79231 1h30A 422 23.26 b.29.1.4,b.29.1.4 76604,76605 3gg4A 554 23.46 1iwlA 182 23.51 b.125.1.1 83757 3ifrA 508 24.76 1zvtA 256 26.94 1t9fA 187 26.99 b.42.6.1 106710 2zf5O 497 27.24 2fbeA 201 27.99 b.29.1.22 133241 1at0A 145 29.05 b.86.1.1 28374 2f2fC 186 29.20 b.42.2.1 132812 2ihoA 293 29.20 b.42.2.1,d.3.1.18 147681,147682 3kf5A 512 29.26 1e30A 155 31.04 b.6.1.1 23016 2gkeA 274 32.05 d.21.1.1,d.21.1.1 135329,135330 1gydB 315 32.25 b.67.2.1 70751 2a2cA 478 32.45 3hihA 223 32.51 3fvhA 237 32.74 1yrzA 528 32.79 b.29.1.23,b.67.2.1 123948,123949 3kstA 306 32.84 2aaiB 262 32.98 b.42.2.1,b.42.2.1 25561,25562 1knmA 130 33.44 b.42.2.1 72781 3hz6A 511 33.81 3h3nO 506 34.08 1s1dA 331 34.61 b.67.3.1 98344 3h46O 506 35.00 1m6kA 251 35.04 e.3.1.1 78695 2e4qA 109 35.54 3lorA 160 36.48 2pz4A 239 36.70 2ifsA 169 37.65 1o7dD 282 38.10 2ej8A 160 38.28 3hlkA 446 38.73 2ijaA 295 38.88 3lb9A 182 39.51 3hkxA 283 40.72 2itmA 484 41.05 2ac1A 541 41.17 1vm9A 111 41.72 b.33.1.1 108886 3ewlA 142 42.21 2d4wA 504 42.88 3me7A 170 43.08 2zpdA 190 43.73 2wjsA 608 44.01 1ddmA 135 44.07 b.55.1.2 26993 1gyhA 318 44.63 b.67.2.1 70757 3fldA 153 45.15 2z4iA 233 47.78 2dejA 350 47.90 3flcO 518 48.17 2jxwA 75 48.55 3hdcA 158 50.50 3f6kA 685 50.53 3kcmA 154 50.65 3ep0A 170 51.60 3ld7A 101 51.87 3a35A 190 52.47 2kppA 114 52.59 2qpwA 149 52.69 3ihxA 152 53.06 2w7qA 204 53.39 2gf6A 135 53.39 d.38.1.1 135077 3by9A 260 53.69 2eabA 899 53.70 1ly2A 130 54.15 g.18.1.1,g.18.1.1 74335,74336 3d7eO 505 54.81 3k1wA 341 55.33 2d5fA 493 55.63 2hq7A 146 55.79 b.45.1.1 136657 1od5A 492 56.35 b.82.1.2,b.82.1.2 86832,86833 3idaA 587 56.50 3fnsA 332 59.02 3ll3A 504 59.49 1wlgA 299 59.58 b.152.1.1 114726 3gqsA 106 59.72 2erfA 209 59.95 b.29.1.4 132287 1n9bA 265 61.55 e.3.1.1 85463 2w1vA 276 61.90 3lwaA 183 62.03 3cjyA 259 62.24 1u6lA 149 64.93 d.32.1.7 113067 1uxzA 131 66.09 b.18.1.10 100170 2f2fA 222 66.49 b.42.2.1 132810 3silA 379 67.06 b.68.1.1 27542 1r59O 505 67.22 c.55.1.4,c.55.1.4 111697,111698 3lwgA 145 67.58 2zuxA 591 67.86 1f89A 291 68.06 d.160.1.1 64988 3fzyA 234 68.49 2wl1A 191 69.13 2vqaA 361 70.86 3l0qA 554 71.20 2yzyA 200 72.08 2e9qA 459 72.87 1vkdA 338 73.04 b.67.2.4 108644 1xvqA 175 74.44 c.47.1.10 116094 1kj1D 109 75.07 b.78.1.1 68639 2v2fF 390 75.23 2bmoA 447 76.14 b.33.1.2,d.129.3.3 128804,128805 1jpcA 109 77.07 b.78.1.1 27986 3khyA 384 77.62 3lhnA 126 77.70 2fvgA 340 77.93 b.49.3.1,c.56.5.4 134201,134202 2b1kA 168 78.01 1uypA 432 78.21 b.29.1.19,b.67.2.3 100176,100177 1gl4A 285 79.46 d.22.1.2,g.3.11.5 65286,65287 3b8fA 142 79.55 2je8A 848 79.81 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 3gceA 121 80.18 1m2tB 263 80.40 b.42.2.1,b.42.2.1 84762,84763 2pimA 141 80.86 1umwA 237 81.34 d.223.1.2,d.223.1.2 99631,99632 2f9sA 151 83.67 c.47.1.10 133168 2ho9A 167 84.27 3f7xA 151 86.54 3eurA 142 86.78 2j8gA 339 86.99 b.109.1.1,c.1.8.8 147915,147916 2b20A 403 87.09 b.1.18.20,c.69.1.2 127685,127686 3cmiA 171 88.99 2d1zA 436 90.00