# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 9.33e-26 2qc5A 300 6.84e-25 2pbiB 354 7.22e-25 3emhA 318 1.85e-24 2gnqA 336 1.91e-24 2bcjB 340 1.99e-24 b.69.4.1 128289 1a0rB 340 2.01e-24 b.69.4.1 27658 2h14A 317 2.12e-24 1gxrA 337 3.84e-24 b.69.4.1 70722 1gotB 340 4.14e-24 b.69.4.1 27648 3ei4B 436 4.76e-23 3frxA 319 5.37e-23 1nr0A 611 5.67e-23 b.69.4.1,b.69.4.1 86078,86079 3fm0A 345 9.74e-23 1r5mA 425 4.58e-22 1yfqA 342 7.05e-22 b.69.4.2 116680 3ei3B 383 7.69e-22 2qxvA 361 1.01e-21 3iiwA 365 1.91e-21 2oitA 434 1.98e-21 3k26A 366 2.56e-21 3dxkC 372 2.56e-21 1ri6A 343 2.64e-21 b.69.11.1 97503 1nexB 464 2.98e-21 a.158.1.1,b.69.4.1 80443,80444 1k8kC 372 3.09e-21 b.69.4.1 68308 1u4cA 349 3.49e-21 b.69.4.2 107666 1q7fA 286 4.08e-21 b.68.9.1 96036 2ovrB 445 4.09e-21 a.158.1.1,b.69.4.1 145735,145736 3fvzA 329 4.19e-21 3hxjA 330 6.55e-21 1l0qA 391 8.25e-21 b.1.3.1,b.69.2.3 77644,77645 3i2nA 357 1.19e-20 1p22A 435 1.23e-20 a.158.1.1,b.69.4.1 87715,87716 2iaaA 390 1.28e-20 2oajA 902 1.32e-20 2aq5A 402 1.52e-20 2agyA 361 3.22e-20 1pguA 615 3.40e-20 b.69.4.1,b.69.4.1 88069,88070 1pbyB 337 3.64e-20 b.69.2.2 94422 3dw8B 447 4.18e-20 1sq9A 397 5.10e-20 b.69.4.1 105889 1rwiA 270 5.24e-20 b.68.9.1 97987 2hesX 330 5.71e-20 3hfqA 347 5.82e-20 2gc7A 386 6.12e-20 b.69.2.1 134954 2ad6A 571 6.35e-20 b.70.1.1 126568 1yiqA 689 6.66e-20 1w6sA 599 8.44e-20 b.70.1.1 114284 2w18A 356 9.79e-20 3bwsA 433 1.06e-19 1jmxB 349 1.23e-19 b.69.2.2 66906 3c99A 432 1.34e-19 3cfsB 414 1.64e-19 3c5mA 396 1.66e-19 2vduB 450 1.72e-19 3dsmA 328 1.81e-19 2pm7B 297 2.53e-19 1kv9A 668 2.58e-19 a.3.1.6,b.70.1.1 73056,73057 2ojhA 297 3.76e-19 2hqsA 415 4.03e-19 b.68.4.1,c.51.2.1 136662,136663 3acpA 417 4.89e-19 1g72A 573 5.02e-19 b.70.1.1 27680 1lrwA 600 5.30e-19 b.70.1.1 91111 3e5zA 296 5.59e-19 3gfcA 425 8.33e-19 3dwlC 377 8.35e-19 1pjxA 314 8.42e-19 b.68.6.1 104167 3greA 437 9.06e-19 2madH 373 1.03e-18 b.69.2.1 27639 2dg1A 333 1.03e-18 b.68.6.1 131493 3llpA 493 1.35e-18 3ei3A 1158 1.96e-18 1kb0A 677 2.14e-18 a.3.1.6,b.70.1.1 68378,68379 1jofA 365 2.46e-18 b.69.10.1 71775 3c75H 426 2.95e-18 2j04B 524 3.26e-18 2oizA 361 3.67e-18 3f3fA 351 4.06e-18 3e0cA 1140 1.62e-17 1s4uX 407 1.65e-17 b.69.4.1 112027 3li5A 314 1.76e-17 1k32A 1045 2.63e-17 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3hrpA 409 4.59e-17 2bklA 695 5.29e-17 3dr2A 305 5.66e-17 2ghsA 326 1.34e-16 b.68.6.1 135209 3fgbA 361 1.45e-16 1cruA 454 3.20e-16 b.68.2.1 27617 2p4oA 306 5.85e-16 b.68.6.3 149216 2gopA 347 9.39e-16 2qe8A 343 1.35e-15 1orvA 728 1.85e-15 b.70.3.1,c.69.1.24 87354,87355 3g4eA 297 2.27e-15 1yr2A 741 3.28e-15 3li4A 314 4.50e-15 1xfdA 723 6.72e-15 b.70.3.1,c.69.1.24 115251,115252 3i1cA 324 7.36e-15 3li3A 314 8.26e-15 1npeA 267 4.81e-14 b.68.5.1 92032 1h2wA 710 2.06e-13 b.69.7.1,c.69.1.4 76596,76597 1mdaH 368 3.94e-13 b.69.2.1 27637 1v04A 355 9.60e-13 b.68.6.2 100240 2fp8A 322 1.92e-12 3dasA 347 7.94e-11 3kyaA 496 1.31e-10 2ismA 352 2.43e-10 2z3zA 706 2.11e-09 3elqA 571 2.95e-08 2d5lA 706 9.27e-08 2hu5A 582 1.91e-07 b.69.7.2,c.69.1.33 136763,136764 2g8sA 353 2.94e-07 2p9wA 334 4.00e-07 2be1A 339 5.83e-07 1o6gA 710 7.13e-07 b.69.7.1,c.69.1.4 81087,81088 2iwaA 266 1.19e-06 3g0bA 740 1.16e-05 3hacA 728 3.35e-05 2wg3C 463 7.30e-05 1k3iA 656 0.000104 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1zgkA 308 0.000171 b.68.11.1 145998 2vpjA 301 0.000628 1x2jA 316 0.001124 b.68.11.1 121643 2fluX 308 0.001659 b.68.11.1 133750 3gc3B 363 0.002080 3ii7A 306 0.002335 3hx6A 570 0.002952 2qr5A 582 0.003237 b.69.7.2,c.69.1.33 151278,151279 2eceA 462 0.005057 2zwaA 695 0.01407 2sliA 679 0.03332 b.29.1.9,b.68.1.1 24274,27611 2b5nA 323 0.04419 1utcA 363 0.04628 a.118.1.4,b.69.6.1 99914,99915 2wozA 318 0.07633 2bibA 547 0.1238 b.109.1.1,d.157.1.8 128581,128582 2vw2A 697 0.1324 2wftA 458 0.1421 1h6lA 353 0.1535 b.68.3.1 60687 3c9zA 258 0.1556 2uvkA 357 0.1643 2pooA 355 0.1720 b.68.3.1 27626 3b7fA 394 0.1802 3kciA 389 0.1960 2jkbA 686 0.2055 2w20A 471 0.2745 2v05A 311 0.3246 3hxrA 761 0.3368 1jtdB 273 0.4195 b.69.5.2 67265 1xipA 388 0.5396 b.69.14.1 115360 2bf6A 449 0.7663 2wg4B 457 0.7926 3h7nA 729 0.8650 3kptA 355 1.052 1ofzA 312 1.292 b.68.8.1 86978 2aukA 190 1.299 3lv4A 456 1.760 1wl7A 312 2.004 b.67.2.1 120996 2ww5A 468 2.117 1zi0A 307 2.535 3cu9A 314 2.925 2ww8A 893 3.176 1q47A 495 3.628 b.69.12.1 104532 2cn3A 737 3.838 1so7A 382 3.921 b.68.1.1 112106 2in0A 139 4.018 2w5nA 367 4.409 1sqjA 789 4.455 b.69.13.1,b.69.13.1 105918,105919 1vclA 432 4.968 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3c12A 138 5.351 1suuA 312 5.460 b.68.10.1 99006 1qxmA 300 5.514 b.42.2.1,b.42.2.1 96533,96534 1f5fA 205 5.625 b.29.1.4 24222 3d5yA 314 5.740 1shyB 551 5.901 b.69.12.1,g.16.2.1 105565,105566 3d60A 314 6.069 3d61A 314 6.766 3ah2A 288 7.112 3ibzA 191 7.325 3c7fA 487 8.310 2z8rA 591 8.816 2h0bA 184 8.852 1xksA 450 9.936 b.69.14.1 115422 1uv4A 293 10.01 b.67.2.1 119705 2o62A 270 10.47 b.60.1.9,b.60.1.9 148622,148623 3gldA 295 11.88 3f7fA 729 12.43 2hboA 158 12.67 d.38.1.5 136319 1wp5A 323 13.18 b.68.10.1 114780 2ebsA 789 13.24 b.69.13.1,b.69.13.1 146772,146773 1pz7A 204 13.34 b.29.1.4 95405 1w0pA 781 13.96 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2ayhA 214 14.70 b.29.1.2 24172 3b3qE 197 14.77 b.29.1.4 154813 3hikA 237 15.35 2j04A 588 16.09 2uytA 489 16.27 3malA 199 17.73 1ajoA 214 18.16 b.29.1.2 24179 1v58A 241 18.42 c.47.1.9,d.17.3.1 108371,108372 1ybiA 288 18.70 1qu0A 191 19.57 b.29.1.4 24225 3gbtA 504 20.01 3gleA 295 20.51 3kb5A 193 20.55 3kf5A 512 22.52 3ifrA 508 22.64 1mkeA 152 22.71 b.55.1.4 79231 1iwlA 182 22.81 b.125.1.1 83757 3gg4A 554 22.90 1w8oA 601 23.11 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2iwkA 642 23.32 3k85A 357 23.63 2f2fC 186 24.76 b.42.2.1 132812 1yrzA 528 25.07 b.29.1.23,b.67.2.1 123948,123949 2zf5O 497 25.29 1jfuA 186 25.36 c.47.1.10 62940 1t9fA 187 25.51 b.42.6.1 106710 2ihoA 293 26.74 b.42.2.1,d.3.1.18 147681,147682 2fbeA 201 28.45 b.29.1.22 133241 1at0A 145 29.04 b.86.1.1 28374 3h3nO 506 29.77 1e30A 155 30.45 b.6.1.1 23016 1fwxA 595 30.63 b.6.1.4,b.69.3.1 60069,60070 3hlkA 446 30.78 3h46O 506 31.15 3fvhA 237 31.65 2d4wA 504 31.75 3hz6A 511 31.75 3hihA 223 32.25 3l6vA 370 32.31 1gydB 315 32.48 b.67.2.1 70751 3flcO 518 33.02 1knmA 130 34.08 b.42.2.1 72781 1m6kA 251 34.39 e.3.1.1 78695 3lorA 160 34.55 2gkeA 274 34.89 d.21.1.1,d.21.1.1 135329,135330 2ijaA 295 34.91 2pz4A 239 35.01 1s1dA 331 35.05 b.67.3.1 98344 1vm9A 111 36.19 b.33.1.1 108886 2itmA 484 37.46 1h30A 422 37.63 b.29.1.4,b.29.1.4 76604,76605 2ej8A 160 37.94 2a2cA 478 38.15 2ac1A 541 38.45 3hkxA 283 38.57 1o7dD 282 39.06 2ifsA 169 39.41 3lb9A 182 40.04 2eabA 899 40.63 2aaiB 262 40.65 b.42.2.1,b.42.2.1 25561,25562 2e4qA 109 41.07 3me7A 170 41.16 3by9A 260 41.52 3ewlA 142 41.58 1zvtA 256 41.73 3kstA 306 41.97 2zpdA 190 42.81 2jxwA 75 42.81 1ly2A 130 43.06 g.18.1.1,g.18.1.1 74335,74336 3d7eO 505 44.68 1gyhA 318 44.98 b.67.2.1 70757 1ddmA 135 45.16 b.55.1.2 26993 2z4iA 233 48.54 3kcmA 154 49.52 3ihxA 152 50.45 3fldA 153 50.65 3hdcA 158 50.68 3lwaA 183 50.83 2dejA 350 50.84 1m2tB 263 51.48 b.42.2.1,b.42.2.1 84762,84763 2v2fF 390 51.66 3a35A 190 51.70 3fnsA 332 52.52 3ll3A 504 52.56 2w7qA 204 53.08 1uxzA 131 53.55 b.18.1.10 100170 1wlgA 299 53.98 b.152.1.1 114726 1r59O 505 54.65 c.55.1.4,c.55.1.4 111697,111698 2qpwA 149 55.39 3idaA 587 55.51 2b20A 403 55.60 b.1.18.20,c.69.1.2 127685,127686 1u6lA 149 55.91 d.32.1.7 113067 3ld7A 101 56.15 1kj1D 109 57.13 b.78.1.1 68639 1od5A 492 58.14 b.82.1.2,b.82.1.2 86832,86833 2wjsA 608 59.19 1xvqA 175 59.87 c.47.1.10 116094 2w1vA 276 59.97 3fzyA 234 60.49 2zuxA 591 60.53 2kppA 114 60.59 2d5fA 493 61.08 2fvgA 340 62.26 b.49.3.1,c.56.5.4 134201,134202 2gf6A 135 62.98 d.38.1.1 135077 3k1wA 341 63.02 1n9bA 265 63.33 e.3.1.1 85463 3ep0A 170 63.66 2f2fA 222 65.05 b.42.2.1 132810 3lwgA 145 65.49 2bmoA 447 65.51 b.33.1.2,d.129.3.3 128804,128805 1f89A 291 65.99 d.160.1.1 64988 3cjyA 259 66.01 2erfA 209 68.83 b.29.1.4 132287 2yzyA 200 69.17 2e9qA 459 69.40 3l0qA 554 69.90 3gqsA 106 69.95 2vqaA 361 70.67 2d1zA 436 71.40 3lhnA 126 71.57 2je8A 848 72.10 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1jpcA 109 72.68 b.78.1.1 27986 3f6kA 685 73.03 2j8gA 339 75.78 b.109.1.1,c.1.8.8 147915,147916 2b1kA 168 75.96 2hq7A 146 76.73 b.45.1.1 136657 3bodA 178 77.00 3b8fA 142 77.40 1u0tA 307 78.10 e.52.1.1 107567 1o4yA 288 78.71 b.29.1.2 92473 2f9sA 151 79.37 c.47.1.10 133168 1vqoA 240 80.84 b.34.5.3,b.40.4.5 120361,120362 1o6wA 75 81.49 b.72.1.1,b.72.1.1 81103,81104 3f7xA 151 81.73 2pimA 141 81.96 3eurA 142 82.11 1vkdA 338 82.81 b.67.2.4 108644 3ilfA 268 84.75 1gl4A 285 84.77 d.22.1.2,g.3.11.5 65286,65287 1uypA 432 85.49 b.29.1.19,b.67.2.3 100176,100177 3cmiA 171 85.77 2wl1A 191 86.52 2h4uA 145 87.29 d.38.1.5 136082 2ho9A 167 88.46