# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 4.06e-30 2pbiB 354 4.86e-30 2gnqA 336 1.70e-29 1a0rB 340 1.77e-29 b.69.4.1 27658 2qc5A 300 1.99e-29 3emhA 318 2.10e-29 2bcjB 340 2.43e-29 b.69.4.1 128289 2h14A 317 2.70e-29 1gotB 340 4.26e-29 b.69.4.1 27648 1gxrA 337 1.81e-28 b.69.4.1 70722 3frxA 319 3.06e-28 3ei4B 436 1.81e-27 1nr0A 611 2.12e-27 b.69.4.1,b.69.4.1 86078,86079 3fm0A 345 3.44e-27 1r5mA 425 1.14e-26 2ovrB 445 3.88e-26 a.158.1.1,b.69.4.1 145735,145736 3ei3B 383 4.85e-26 2qxvA 361 8.59e-26 3k26A 366 1.05e-25 3iiwA 365 1.05e-25 1nexB 464 2.39e-25 a.158.1.1,b.69.4.1 80443,80444 3dxkC 372 2.46e-25 1u4cA 349 2.71e-25 b.69.4.2 107666 1yfqA 342 2.80e-25 b.69.4.2 116680 1l0qA 391 4.68e-25 b.1.3.1,b.69.2.3 77644,77645 1k8kC 372 5.81e-25 b.69.4.1 68308 3i2nA 357 5.82e-25 1p22A 435 6.01e-25 a.158.1.1,b.69.4.1 87715,87716 1ri6A 343 8.62e-25 b.69.11.1 97503 2oitA 434 8.76e-25 1pguA 615 1.30e-24 b.69.4.1,b.69.4.1 88069,88070 1q7fA 286 1.36e-24 b.68.9.1 96036 2hesX 330 4.28e-24 2aq5A 402 5.12e-24 1sq9A 397 5.31e-24 b.69.4.1 105889 1pbyB 337 7.36e-24 b.69.2.2 94422 3hxjA 330 7.76e-24 3fvzA 329 8.68e-24 2iaaA 390 1.08e-23 3dw8B 447 1.10e-23 3cfsB 414 1.94e-23 2oajA 902 2.65e-23 1jmxB 349 3.19e-23 b.69.2.2 66906 3c99A 432 4.05e-23 2agyA 361 4.29e-23 3hfqA 347 4.66e-23 3dsmA 328 5.32e-23 2gc7A 386 5.58e-23 b.69.2.1 134954 2pm7B 297 5.97e-23 1rwiA 270 5.97e-23 b.68.9.1 97987 3gfcA 425 6.50e-23 3bwsA 433 7.81e-23 2w18A 356 8.87e-23 3c5mA 396 9.95e-23 3acpA 417 1.39e-22 2ad6A 571 2.01e-22 b.70.1.1 126568 1w6sA 599 2.23e-22 b.70.1.1 114284 3e5zA 296 2.99e-22 3dwlC 377 3.26e-22 2dg1A 333 3.39e-22 b.68.6.1 131493 2ojhA 297 3.39e-22 2vduB 450 4.15e-22 1pjxA 314 4.18e-22 b.68.6.1 104167 1g72A 573 4.29e-22 b.70.1.1 27680 2hqsA 415 5.60e-22 b.68.4.1,c.51.2.1 136662,136663 1jofA 365 6.70e-22 b.69.10.1 71775 3greA 437 7.65e-22 1yiqA 689 9.25e-22 1lrwA 600 1.13e-21 b.70.1.1 91111 1kv9A 668 1.27e-21 a.3.1.6,b.70.1.1 73056,73057 3f3fA 351 1.32e-21 2oizA 361 2.00e-21 1s4uX 407 2.88e-21 b.69.4.1 112027 3c75H 426 2.98e-21 1kb0A 677 3.35e-21 a.3.1.6,b.70.1.1 68378,68379 3ei3A 1158 9.77e-21 2j04B 524 1.03e-20 3llpA 493 1.76e-20 2madH 373 2.07e-20 b.69.2.1 27639 3li5A 314 3.78e-20 1k32A 1045 4.44e-20 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3e0cA 1140 6.12e-20 3fgbA 361 8.71e-20 3dr2A 305 1.12e-19 3hrpA 409 1.66e-19 2ghsA 326 2.19e-19 b.68.6.1 135209 2bklA 695 2.81e-19 2p4oA 306 5.08e-19 b.68.6.3 149216 2gopA 347 1.54e-18 2qe8A 343 2.48e-18 3g4eA 297 2.59e-18 3i1cA 324 4.25e-18 1cruA 454 6.49e-18 b.68.2.1 27617 3li4A 314 6.54e-18 3li3A 314 9.00e-18 1orvA 728 1.35e-17 b.70.3.1,c.69.1.24 87354,87355 1npeA 267 2.83e-17 b.68.5.1 92032 1yr2A 741 9.46e-17 1xfdA 723 1.17e-16 b.70.3.1,c.69.1.24 115251,115252 1mdaH 368 9.21e-16 b.69.2.1 27637 1v04A 355 2.00e-15 b.68.6.2 100240 1h2wA 710 2.42e-15 b.69.7.1,c.69.1.4 76596,76597 2fp8A 322 3.18e-15 3dasA 347 3.01e-13 3kyaA 496 8.87e-13 2ismA 352 1.04e-12 2z3zA 706 1.69e-10 2p9wA 334 1.55e-09 3elqA 571 2.71e-09 2g8sA 353 3.02e-09 2iwaA 266 1.22e-08 2d5lA 706 1.59e-08 2be1A 339 1.65e-08 1o6gA 710 5.11e-08 b.69.7.1,c.69.1.4 81087,81088 2hu5A 582 1.04e-07 b.69.7.2,c.69.1.33 136763,136764 3hacA 728 2.03e-06 3g0bA 740 2.12e-06 1k3iA 656 4.72e-06 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1zgkA 308 5.12e-06 b.68.11.1 145998 2wg3C 463 1.29e-05 2fluX 308 1.98e-05 b.68.11.1 133750 1x2jA 316 1.98e-05 b.68.11.1 121643 2vpjA 301 5.61e-05 3ii7A 306 6.18e-05 3gc3B 363 0.000115 2eceA 462 0.000225 2zwaA 695 0.000546 3hx6A 570 0.000621 2b5nA 323 0.000813 2qr5A 582 0.000901 b.69.7.2,c.69.1.33 151278,151279 2wozA 318 0.002008 2uvkA 357 0.003604 2pooA 355 0.003851 b.68.3.1 27626 1h6lA 353 0.004727 b.68.3.1 60687 3b7fA 394 0.004802 1utcA 363 0.007484 a.118.1.4,b.69.6.1 99914,99915 1xipA 388 0.01178 b.69.14.1 115360 2wftA 458 0.02281 3hxrA 761 0.04844 1q47A 495 0.06019 b.69.12.1 104532 1so7A 382 0.06570 b.68.1.1 112106 3h7nA 729 0.07206 3c9zA 258 0.09687 1ofzA 312 0.1057 b.68.8.1 86978 3kciA 389 0.1338 2vw2A 697 0.1362 1qxmA 300 0.1544 b.42.2.1,b.42.2.1 96533,96534 2wg4B 457 0.1597 3ah2A 288 0.2312 1jtdB 273 0.2816 b.69.5.2 67265 1suuA 312 0.3016 b.68.10.1 99006 2sliA 679 0.3289 b.29.1.9,b.68.1.1 24274,27611 2w20A 471 0.3476 2ebsA 789 0.3684 b.69.13.1,b.69.13.1 146772,146773 1zi0A 307 0.3716 2iwkA 642 0.6131 3f7fA 729 0.6133 2jkbA 686 1.005 3cu9A 314 1.124 1wl7A 312 1.198 b.67.2.1 120996 1xksA 450 1.265 b.69.14.1 115422 2aukA 190 1.278 1gydB 315 1.546 b.67.2.1 70751 1sqjA 789 1.604 b.69.13.1,b.69.13.1 105918,105919 2z8rA 591 1.655 1fwxA 595 1.679 b.6.1.4,b.69.3.1 60069,60070 2j04A 588 1.823 3b3qE 197 1.962 b.29.1.4 154813 2cn3A 737 1.962 1shyB 551 2.136 b.69.12.1,g.16.2.1 105565,105566 3l6vA 370 2.271 1wp5A 323 2.390 b.68.10.1 114780 1jfuA 186 2.717 c.47.1.10 62940 2ihoA 293 3.195 b.42.2.1,d.3.1.18 147681,147682 3d5yA 314 3.303 3kstA 306 3.426 2bf6A 449 3.444 1f5fA 205 3.482 b.29.1.4 24222 1ybiA 288 4.189 2w5nA 367 4.206 3d61A 314 4.427 3lv4A 456 4.690 2ej8A 160 5.046 3d60A 314 5.199 3kb5A 193 5.262 3hikA 237 5.470 1zvtA 256 7.006 3kcmA 154 7.154 1gyhA 318 7.378 b.67.2.1 70757 1uv4A 293 7.494 b.67.2.1 119705 1v58A 241 8.091 c.47.1.9,d.17.3.1 108371,108372 1kj1D 109 8.570 b.78.1.1 68639 1ddmA 135 8.937 b.55.1.2 26993 2h0bA 184 9.059 2zuxA 591 9.833 1iwlA 182 10.30 b.125.1.1 83757 2b1kA 168 10.33 3bodA 178 10.97 2ex2A 458 11.03 e.3.1.3 132497 1t3bA 211 12.40 c.47.1.9,d.17.3.1 106341,106342 2p8eA 307 13.73 3lwaA 183 13.91 3kh7A 176 14.19 1qu0A 191 14.27 b.29.1.4 24225 3c12A 138 14.35 2bwrA 401 14.54 2hboA 158 14.67 d.38.1.5 136319 3lorA 160 15.82 3me7A 170 15.85 3a0vA 96 16.87 3ewlA 142 17.21 1w79A 489 17.88 e.3.1.3 120680 2f9sA 151 18.45 c.47.1.10 133168 3gg4A 554 18.76 1mkeA 152 18.80 b.55.1.4 79231 3c7fA 487 18.99 3fvhA 237 19.13 3ifrA 508 19.20 3gbtA 504 19.48 2uytA 489 19.50 3hdcA 158 20.16 1w0pA 781 21.06 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1kngA 156 21.50 c.47.1.10 72777 2erfA 209 21.73 b.29.1.4 132287 3gl3A 152 21.77 2bibA 547 22.14 b.109.1.1,d.157.1.8 128581,128582 2v05A 311 22.38 3hkxA 283 23.15 3a3dA 453 23.99 3idaA 587 24.50 3b8fA 142 24.50 2aaiB 262 24.92 b.42.2.1,b.42.2.1 25561,25562 3gceA 121 24.99 3k8nA 185 25.02 3eurA 142 25.16 2fbeA 201 25.39 b.29.1.22 133241 3hihA 223 25.45 1vrmA 325 25.84 d.96.2.1 120472 1pz7A 204 26.44 b.29.1.4 95405 2ac1A 541 26.88 2w7qA 204 27.61 3h6jA 438 28.08 2zr1B 267 28.12 1ntvA 152 28.21 b.55.1.2 86168 2fhqA 141 28.27 b.45.1.1 133497 2fy6A 143 29.62 c.47.1.10 134344 1jpcA 109 30.20 b.78.1.1 27986 1f89A 291 30.26 d.160.1.1 64988 1xvqA 175 30.33 c.47.1.10 116094 2elaA 175 30.78 1r59O 505 31.45 c.55.1.4,c.55.1.4 111697,111698 3hczA 148 31.51 1s1dA 331 31.58 b.67.3.1 98344 3iosA 150 31.97 2in3A 216 32.71 2in0A 139 32.74 2wl1A 191 32.76 1es5A 262 33.13 e.3.1.1 42679 1w8oA 601 33.46 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 3fkfA 148 34.53 1zaiA 363 34.76 c.1.10.1 124828 2dpfA 115 35.16 3hz6A 511 35.32 2zf5O 497 35.79 1st9A 143 39.51 c.47.1.10 98987 3lhnA 126 39.84 3flcO 518 40.51 2zpdA 190 40.62 3ihxA 152 40.95 1p2hA 571 40.95 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 3cjyA 259 42.55 3dxeA 140 43.34 2w1vA 276 43.86 2hq7A 146 44.75 b.45.1.1 136657 1earA 147 44.97 b.107.1.1,d.58.38.1 64875,64876 1shuX 182 45.03 c.62.1.1 98882 3k85A 357 46.75 3ervA 236 46.91 1at0A 145 47.14 b.86.1.1 28374 2dejA 350 48.14 2w08A 204 48.24 3fosA 214 48.92 1aqcA 172 49.85 b.55.1.2 26983 1ju3A 583 50.48 b.18.1.13,c.69.1.21 67300,67301 3ef2A 293 50.52 1lu4A 136 50.79 c.47.1.10 91124 1q9iA 571 50.96 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 3h46O 506 51.75 2ho9A 167 51.79 1n9bA 265 52.27 e.3.1.1 85463 3ld7A 101 52.83 3erwA 145 54.58 2itmA 484 55.20 3f6kA 685 55.20 3db5A 151 56.64 2d4wA 504 56.84 2h30A 164 56.89 3bbjA 272 57.42 3h3nO 506 57.81 3l2oB 312 58.16 3ez8A 537 58.31 2qm1A 326 58.60 1umwA 237 59.24 d.223.1.2,d.223.1.2 99631,99632 2pagA 135 59.63 d.369.1.1 149343 3gzkA 537 61.34 1o8xA 146 62.96 c.47.1.10 86681 1h4vB 421 63.22 c.51.1.1,d.104.1.1 60624,60625 2a2cA 478 64.18 1v9yA 167 64.47 d.110.3.2 108454 2cm1A 260 64.48 1uc7A 125 65.11 c.47.1.1 99163 3ep0A 170 66.08 2pimA 141 66.62 2e4qA 109 68.91 1yewA 382 69.60 1z5yE 149 69.76 c.47.1.10 124498 3kptA 355 70.04 2pjrA 548 70.31 c.37.1.19,c.37.1.19 32395,32396 3i57A 185 70.48 2cohA 202 71.77 a.4.5.4,b.82.3.2 130677,130678 3k8uA 156 71.78 3ll3A 504 73.39 2h4uA 145 73.62 d.38.1.5 136082 2i9uA 439 75.24 b.92.1.4,c.1.9.9 147572,147573 3d8dA 148 75.32 3c8cA 240 75.49 2uzxB 727 75.65 1kkhA 317 75.93 d.14.1.5,d.58.26.3 72645,72646 1wwzA 159 78.05 d.108.1.1 121380 2dlxA 153 78.94 c.47.1.24 146543 1olzA 663 79.53 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1ro2A 216 80.80 d.264.1.2 97665 2qy6A 257 81.20 3gg6A 156 81.47 2d1zA 436 81.64 1vkdA 338 81.97 b.67.2.4 108644 1u6lA 149 82.22 d.32.1.7 113067 1j83A 180 82.35 b.18.1.12 66430 2cz9A 350 83.30 1s7jA 262 84.97 d.21.1.2 98647 1pxuA 131 86.37 b.40.3.2 104383 3c2uA 538 86.97 3fzyA 234 87.18 1j31A 262 87.84 d.160.1.2 90808 1ukfA 188 87.96 d.3.1.10 99488 2ww5A 468 88.06 3fw2A 150 88.30 3d7eO 505 88.92 2zyzB 183 89.06