# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 4.53e-20 2pbiB 354 1.10e-19 2qc5A 300 1.34e-19 2gnqA 336 2.66e-19 2h14A 317 2.80e-19 1gotB 340 3.32e-19 b.69.4.1 27648 2bcjB 340 3.40e-19 b.69.4.1 128289 3emhA 318 3.62e-19 1a0rB 340 4.37e-19 b.69.4.1 27658 1gxrA 337 1.23e-18 b.69.4.1 70722 3frxA 319 4.76e-18 3ei4B 436 6.21e-18 1nr0A 611 1.63e-17 b.69.4.1,b.69.4.1 86078,86079 3fm0A 345 3.58e-17 1r5mA 425 3.87e-17 3iiwA 365 4.92e-17 2qxvA 361 5.22e-17 1yfqA 342 5.53e-17 b.69.4.2 116680 3k26A 366 5.58e-17 3ei3B 383 7.43e-17 2ovrB 445 7.79e-17 a.158.1.1,b.69.4.1 145735,145736 1u4cA 349 8.21e-17 b.69.4.2 107666 1ri6A 343 1.45e-16 b.69.11.1 97503 3hxjA 330 1.88e-16 1k8kC 372 2.27e-16 b.69.4.1 68308 3fvzA 329 2.43e-16 1nexB 464 2.49e-16 a.158.1.1,b.69.4.1 80443,80444 3i2nA 357 3.03e-16 1pbyB 337 3.59e-16 b.69.2.2 94422 1p22A 435 3.68e-16 a.158.1.1,b.69.4.1 87715,87716 2oitA 434 4.04e-16 3dxkC 372 4.04e-16 3dw8B 447 4.28e-16 1q7fA 286 4.42e-16 b.68.9.1 96036 2agyA 361 5.82e-16 1l0qA 391 5.91e-16 b.1.3.1,b.69.2.3 77644,77645 2iaaA 390 6.36e-16 2aq5A 402 6.53e-16 1sq9A 397 6.79e-16 b.69.4.1 105889 2oajA 902 1.32e-15 1yiqA 689 1.55e-15 1jmxB 349 1.58e-15 b.69.2.2 66906 3hfqA 347 2.12e-15 2hesX 330 2.15e-15 2vduB 450 2.18e-15 3bwsA 433 2.44e-15 2w18A 356 2.59e-15 3cfsB 414 2.87e-15 3c99A 432 3.31e-15 2ojhA 297 3.53e-15 2gc7A 386 3.87e-15 b.69.2.1 134954 1rwiA 270 4.84e-15 b.68.9.1 97987 3acpA 417 4.86e-15 3c5mA 396 5.35e-15 1w6sA 599 5.45e-15 b.70.1.1 114284 3gfcA 425 5.66e-15 3dsmA 328 6.36e-15 2j04B 524 9.26e-15 2hqsA 415 1.01e-14 b.68.4.1,c.51.2.1 136662,136663 3e5zA 296 1.05e-14 3dwlC 377 1.09e-14 1pguA 615 1.10e-14 b.69.4.1,b.69.4.1 88069,88070 2madH 373 1.35e-14 b.69.2.1 27639 1pjxA 314 1.74e-14 b.68.6.1 104167 2ad6A 571 1.96e-14 b.70.1.1 126568 2pm7B 297 2.06e-14 1jofA 365 2.16e-14 b.69.10.1 71775 1kv9A 668 2.52e-14 a.3.1.6,b.70.1.1 73056,73057 3llpA 493 3.13e-14 3c75H 426 3.18e-14 3greA 437 3.36e-14 1lrwA 600 3.89e-14 b.70.1.1 91111 1s4uX 407 4.26e-14 b.69.4.1 112027 2dg1A 333 5.04e-14 b.68.6.1 131493 2oizA 361 5.72e-14 3f3fA 351 7.24e-14 3e0cA 1140 1.50e-13 1g72A 573 1.99e-13 b.70.1.1 27680 3li5A 314 3.56e-13 3dr2A 305 4.66e-13 3fgbA 361 5.04e-13 3ei3A 1158 5.74e-13 3hrpA 409 1.05e-12 2ghsA 326 1.19e-12 b.68.6.1 135209 1kb0A 677 1.39e-12 a.3.1.6,b.70.1.1 68378,68379 1k32A 1045 1.87e-12 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2gopA 347 2.57e-12 2p4oA 306 2.88e-12 b.68.6.3 149216 2bklA 695 2.89e-12 1cruA 454 3.74e-12 b.68.2.1 27617 3g4eA 297 6.48e-12 1yr2A 741 9.85e-12 2qe8A 343 1.18e-11 3i1cA 324 2.18e-11 3li4A 314 2.27e-11 1orvA 728 2.28e-11 b.70.3.1,c.69.1.24 87354,87355 3li3A 314 3.51e-11 1xfdA 723 7.45e-11 b.70.3.1,c.69.1.24 115251,115252 1h2wA 710 7.89e-11 b.69.7.1,c.69.1.4 76596,76597 1npeA 267 1.10e-10 b.68.5.1 92032 1mdaH 368 9.47e-10 b.69.2.1 27637 1v04A 355 1.50e-09 b.68.6.2 100240 2fp8A 322 5.20e-09 3dasA 347 1.97e-08 3kyaA 496 3.30e-08 2ismA 352 4.68e-08 2z3zA 706 1.78e-06 2d5lA 706 4.60e-06 2g8sA 353 1.44e-05 2be1A 339 2.89e-05 1o6gA 710 2.89e-05 b.69.7.1,c.69.1.4 81087,81088 2hu5A 582 6.05e-05 b.69.7.2,c.69.1.33 136763,136764 2iwaA 266 7.16e-05 3elqA 571 7.81e-05 2p9wA 334 9.68e-05 3g0bA 740 0.000847 3hacA 728 0.002561 1k3iA 656 0.003238 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2wg3C 463 0.01107 1zgkA 308 0.01207 b.68.11.1 145998 3gc3B 363 0.01769 3hx6A 570 0.02287 2vpjA 301 0.02908 1x2jA 316 0.03847 b.68.11.1 121643 2fluX 308 0.06865 b.68.11.1 133750 2qr5A 582 0.08261 b.69.7.2,c.69.1.33 151278,151279 2eceA 462 0.09496 1utcA 363 0.1119 a.118.1.4,b.69.6.1 99914,99915 3ii7A 306 0.1422 2zwaA 695 0.3376 2vw2A 697 0.3650 2pooA 355 0.4966 b.68.3.1 27626 3b7fA 394 0.5658 2b5nA 323 0.9125 3kciA 389 0.995 2jkbA 686 1.212 2bibA 547 1.304 b.109.1.1,d.157.1.8 128581,128582 2wozA 318 1.307 2sliA 679 1.382 b.29.1.9,b.68.1.1 24274,27611 1h6lA 353 1.506 b.68.3.1 60687 3c9zA 258 1.571 1xipA 388 2.135 b.69.14.1 115360 1ofzA 312 2.503 b.68.8.1 86978 1q47A 495 2.716 b.69.12.1 104532 1w0pA 781 2.885 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2wg4B 457 2.898 1jtdB 273 3.478 b.69.5.2 67265 2uvkA 357 3.988 2ww8A 893 4.513 3lv4A 456 4.862 2v2fF 390 8.085 3c7fA 487 8.455 3kptA 355 9.704 2ac1A 541 9.923 2iwkA 642 10.08 2aukA 190 10.46 1fwxA 595 11.95 b.6.1.4,b.69.3.1 60069,60070 2uytA 489 12.65 1v58A 241 12.86 c.47.1.9,d.17.3.1 108371,108372 1jfuA 186 13.87 c.47.1.10 62940 1qxmA 300 14.57 b.42.2.1,b.42.2.1 96533,96534 1wl7A 312 14.63 b.67.2.1 120996 1vclA 432 15.06 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3cu9A 314 16.02 2je8A 848 16.93 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 1so7A 382 17.00 b.68.1.1 112106 3fsnA 533 17.13 2itmA 484 17.22 3hkxA 283 18.08 3ah2A 288 19.51 2v05A 311 20.53 3d60A 314 20.92 3gg4A 554 21.58 2w20A 471 21.64 3kf5A 512 22.23 2z1aA 552 22.30 d.114.1.1,d.159.1.2 153927,153928 1vkdA 338 22.38 b.67.2.4 108644 3d5yA 314 22.96 1r6vA 671 24.11 c.41.1.1 111710 1tg7A 971 24.50 b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14 112418,112419,112420,112421,112422 1xksA 450 24.82 b.69.14.1 115422 3flcO 518 26.50 3ibzA 191 26.79 2ebsA 789 28.51 b.69.13.1,b.69.13.1 146772,146773 3c12A 138 28.53 2in0A 139 28.85 3jvpA 572 29.12 1shyB 551 30.03 b.69.12.1,g.16.2.1 105565,105566 3d61A 314 30.35 1wp5A 323 30.71 b.68.10.1 114780 2w1vA 276 30.97 2ayhA 214 31.09 b.29.1.2 24172 2o62A 270 34.11 b.60.1.9,b.60.1.9 148622,148623 3f7fA 729 34.31 3fvhA 237 34.94 2ww5A 468 35.45 2f57A 317 36.37 3bc9A 599 37.86 2h0bA 184 38.12 3l0qA 554 38.24 1uv4A 293 38.75 b.67.2.1 119705 2erfA 209 39.29 b.29.1.4 132287 2bf6A 449 39.97 1suuA 312 41.09 b.68.10.1 99006 1ybiA 288 41.79 1zrzA 364 43.18 2zf5O 497 43.26 1f5fA 205 43.53 b.29.1.4 24222 1ajoA 214 44.63 b.29.1.2 24179 2r5tA 373 46.57 1pz7A 204 48.95 b.29.1.4 95405 3kvcA 533 48.96 1t9fA 187 49.00 b.42.6.1 106710 2c5wB 385 50.28 e.3.1.1 129958 3gldA 295 50.44 2hboA 158 50.61 d.38.1.5 136319 3gbtA 504 50.83 3h46O 506 52.13 3h9oA 311 52.47 1bu6O 501 52.58 c.55.1.4,c.55.1.4 33499,33500 1olzA 663 54.43 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1qu0A 191 54.87 b.29.1.4 24225 1zi0A 307 56.90 1yrzA 528 62.57 b.29.1.23,b.67.2.1 123948,123949 2wftA 458 62.58 2ihoA 293 63.10 b.42.2.1,d.3.1.18 147681,147682 1o4yA 288 63.40 b.29.1.2 92473 3fzyA 234 63.88 3hikA 237 63.93 2ej8A 160 64.09 1p4kA 295 64.73 d.153.1.5 87772 2e9qA 459 65.33 2f2hA 773 67.93 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1f89A 291 68.32 d.160.1.1 64988 2vktA 289 68.40 1uliA 460 69.43 b.33.1.2,d.129.3.3 107921,107922 2b20A 403 69.70 b.1.18.20,c.69.1.2 127685,127686 3jurA 448 70.98 1yu2A 381 71.79 b.163.1.1,d.169.1.8 124029,124030 3lwaA 183 72.23 3me7A 170 72.39 3d7eO 505 72.39 2f9sA 151 73.08 c.47.1.10 133168 3fldA 153 74.37 2w5nA 367 74.42 3hihA 223 74.64 2f2fC 186 75.65 b.42.2.1 132812 2j04A 588 79.36 2wadA 680 80.01 2h4uA 145 81.15 d.38.1.5 136082 3fz3A 531 81.99 1at0A 145 82.98 b.86.1.1 28374 3lb9A 182 85.18 3k1wA 341 86.34 2pvaA 345 86.55 d.153.1.3 41850 3hn8A 296 86.84 2f2uA 402 88.08 3lorA 160 88.20 3k85A 357 88.83 1mkeA 152 88.98 b.55.1.4 79231