# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 5.34e-23 2qc5A 300 1.91e-22 2pbiB 354 2.57e-22 2gnqA 336 4.91e-22 2h14A 317 5.84e-22 3emhA 318 6.13e-22 1a0rB 340 6.18e-22 b.69.4.1 27658 2bcjB 340 9.78e-22 b.69.4.1 128289 1gotB 340 1.21e-21 b.69.4.1 27648 1gxrA 337 1.71e-21 b.69.4.1 70722 3frxA 319 6.77e-21 1nr0A 611 8.29e-21 b.69.4.1,b.69.4.1 86078,86079 3ei4B 436 2.28e-20 3fm0A 345 3.53e-20 1r5mA 425 5.76e-20 1yfqA 342 1.39e-19 b.69.4.2 116680 2qxvA 361 1.71e-19 3iiwA 365 3.33e-19 3k26A 366 3.45e-19 3ei3B 383 3.72e-19 2ovrB 445 3.73e-19 a.158.1.1,b.69.4.1 145735,145736 1u4cA 349 3.89e-19 b.69.4.2 107666 1ri6A 343 5.19e-19 b.69.11.1 97503 1q7fA 286 5.58e-19 b.68.9.1 96036 2oitA 434 5.68e-19 1nexB 464 5.89e-19 a.158.1.1,b.69.4.1 80443,80444 3hxjA 330 6.20e-19 3dxkC 372 6.49e-19 1l0qA 391 6.51e-19 b.1.3.1,b.69.2.3 77644,77645 1k8kC 372 9.26e-19 b.69.4.1 68308 3fvzA 329 9.52e-19 1p22A 435 1.36e-18 a.158.1.1,b.69.4.1 87715,87716 3i2nA 357 1.61e-18 2aq5A 402 1.99e-18 1pguA 615 2.10e-18 b.69.4.1,b.69.4.1 88069,88070 2iaaA 390 2.59e-18 2oajA 902 2.81e-18 1pbyB 337 4.11e-18 b.69.2.2 94422 2agyA 361 4.49e-18 1sq9A 397 5.01e-18 b.69.4.1 105889 3dw8B 447 5.03e-18 3hfqA 347 5.06e-18 2gc7A 386 8.77e-18 b.69.2.1 134954 2hesX 330 9.25e-18 2w18A 356 1.08e-17 2ad6A 571 1.08e-17 b.70.1.1 126568 1jmxB 349 1.13e-17 b.69.2.2 66906 1rwiA 270 1.18e-17 b.68.9.1 97987 1yiqA 689 1.32e-17 3bwsA 433 1.37e-17 3dsmA 328 1.43e-17 3c5mA 396 1.52e-17 3c99A 432 1.78e-17 1w6sA 599 1.92e-17 b.70.1.1 114284 3cfsB 414 2.17e-17 2ojhA 297 2.27e-17 2vduB 450 2.48e-17 1kv9A 668 2.83e-17 a.3.1.6,b.70.1.1 73056,73057 2hqsA 415 3.23e-17 b.68.4.1,c.51.2.1 136662,136663 3acpA 417 3.40e-17 3e5zA 296 4.32e-17 1g72A 573 5.09e-17 b.70.1.1 27680 1pjxA 314 5.42e-17 b.68.6.1 104167 3gfcA 425 5.81e-17 2pm7B 297 7.24e-17 1lrwA 600 8.57e-17 b.70.1.1 91111 2dg1A 333 8.64e-17 b.68.6.1 131493 3llpA 493 1.05e-16 3greA 437 1.18e-16 1jofA 365 1.22e-16 b.69.10.1 71775 2madH 373 1.44e-16 b.69.2.1 27639 3dwlC 377 1.59e-16 1kb0A 677 1.73e-16 a.3.1.6,b.70.1.1 68378,68379 3f3fA 351 1.96e-16 3ei3A 1158 2.15e-16 2oizA 361 2.40e-16 3c75H 426 3.29e-16 2j04B 524 3.31e-16 1s4uX 407 6.69e-16 b.69.4.1 112027 3li5A 314 1.13e-15 3e0cA 1140 1.29e-15 3hrpA 409 2.15e-15 1k32A 1045 2.27e-15 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3dr2A 305 2.70e-15 2bklA 695 3.11e-15 3fgbA 361 3.58e-15 2ghsA 326 5.10e-15 b.68.6.1 135209 2p4oA 306 1.43e-14 b.68.6.3 149216 1cruA 454 2.57e-14 b.68.2.1 27617 2gopA 347 2.91e-14 2qe8A 343 4.27e-14 3g4eA 297 6.48e-14 1orvA 728 8.18e-14 b.70.3.1,c.69.1.24 87354,87355 3li4A 314 1.17e-13 3i1cA 324 1.42e-13 3li3A 314 1.71e-13 1yr2A 741 2.09e-13 1xfdA 723 3.74e-13 b.70.3.1,c.69.1.24 115251,115252 1npeA 267 1.22e-12 b.68.5.1 92032 1h2wA 710 5.41e-12 b.69.7.1,c.69.1.4 76596,76597 1v04A 355 1.22e-11 b.68.6.2 100240 1mdaH 368 1.32e-11 b.69.2.1 27637 2fp8A 322 2.89e-11 3dasA 347 5.90e-10 3kyaA 496 9.90e-10 2ismA 352 1.06e-09 2z3zA 706 1.25e-08 3elqA 571 7.63e-08 2d5lA 706 6.40e-07 2g8sA 353 8.77e-07 2be1A 339 1.15e-06 2p9wA 334 1.39e-06 2hu5A 582 1.44e-06 b.69.7.2,c.69.1.33 136763,136764 2iwaA 266 2.50e-06 1o6gA 710 2.86e-06 b.69.7.1,c.69.1.4 81087,81088 3g0bA 740 3.24e-05 3hacA 728 8.66e-05 2wg3C 463 0.000166 1k3iA 656 0.000250 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1zgkA 308 0.001186 b.68.11.1 145998 3gc3B 363 0.001330 1x2jA 316 0.004991 b.68.11.1 121643 2vpjA 301 0.005831 2eceA 462 0.005999 3ii7A 306 0.006817 2fluX 308 0.007468 b.68.11.1 133750 3hx6A 570 0.009565 2qr5A 582 0.009635 b.69.7.2,c.69.1.33 151278,151279 1utcA 363 0.03256 a.118.1.4,b.69.6.1 99914,99915 2b5nA 323 0.04369 3b7fA 394 0.05840 2zwaA 695 0.08301 2sliA 679 0.09664 b.29.1.9,b.68.1.1 24274,27611 3c9zA 258 0.1369 2wftA 458 0.1570 2wozA 318 0.1786 3kciA 389 0.1982 2vw2A 697 0.2316 1h6lA 353 0.2576 b.68.3.1 60687 2pooA 355 0.2640 b.68.3.1 27626 1xipA 388 0.3225 b.69.14.1 115360 2uvkA 357 0.4347 2jkbA 686 0.4831 1jtdB 273 0.5850 b.69.5.2 67265 2w20A 471 0.6599 2bibA 547 0.6763 b.109.1.1,d.157.1.8 128581,128582 2wg4B 457 0.8217 3hxrA 761 0.8930 1ofzA 312 1.092 b.68.8.1 86978 2bf6A 449 1.387 2cn3A 737 1.563 2aukA 190 1.596 1qxmA 300 1.649 b.42.2.1,b.42.2.1 96533,96534 2v05A 311 1.665 1so7A 382 1.716 b.68.1.1 112106 1wl7A 312 2.560 b.67.2.1 120996 3h7nA 729 2.967 1q47A 495 3.084 b.69.12.1 104532 3lv4A 456 3.152 3kptA 355 3.277 3cu9A 314 3.482 2z8rA 591 3.589 1sqjA 789 4.277 b.69.13.1,b.69.13.1 105918,105919 3c12A 138 4.323 1xksA 450 4.524 b.69.14.1 115422 3ibzA 191 4.719 3d5yA 314 4.950 3ah2A 288 5.129 2in0A 139 5.160 2ebsA 789 5.218 b.69.13.1,b.69.13.1 146772,146773 2ww8A 893 5.465 2w5nA 367 5.574 2iwkA 642 5.825 1suuA 312 6.782 b.68.10.1 99006 1fwxA 595 6.997 b.6.1.4,b.69.3.1 60069,60070 2h0bA 184 7.134 2ww5A 468 7.442 1zi0A 307 7.486 1uv4A 293 7.491 b.67.2.1 119705 3d60A 314 7.852 1vclA 432 8.383 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1pz7A 204 8.573 b.29.1.4 95405 2ayhA 214 8.870 b.29.1.2 24172 3d61A 314 9.069 1f5fA 205 9.572 b.29.1.4 24222 1shyB 551 9.97 b.69.12.1,g.16.2.1 105565,105566 2uytA 489 10.25 1ybiA 288 10.26 3f7fA 729 10.82 2o62A 270 11.08 b.60.1.9,b.60.1.9 148622,148623 2hboA 158 11.33 d.38.1.5 136319 3kf5A 512 11.38 3gg4A 554 11.65 3b3qE 197 11.87 b.29.1.4 154813 3ifrA 508 13.23 1qu0A 191 13.44 b.29.1.4 24225 1gydB 315 14.38 b.67.2.1 70751 1ajoA 214 14.61 b.29.1.2 24179 1w0pA 781 14.66 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2zf5O 497 14.81 3hikA 237 14.99 3gbtA 504 15.05 2itmA 484 16.00 2ej8A 160 17.04 1wp5A 323 17.07 b.68.10.1 114780 1iwlA 182 17.26 b.125.1.1 83757 3flcO 518 17.28 3hz6A 511 17.48 3kstA 306 17.85 2d4wA 504 18.78 3lorA 160 19.29 3h3nO 506 19.67 3h46O 506 19.96 2j04A 588 20.47 1w8oA 601 20.53 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2ihoA 293 20.56 b.42.2.1,d.3.1.18 147681,147682 3d7eO 505 21.12 3malA 199 21.60 1jfuA 186 21.90 c.47.1.10 62940 1at0A 145 22.00 b.86.1.1 28374 1t9fA 187 22.74 b.42.6.1 106710 1gyhA 318 23.38 b.67.2.1 70757 2aaiB 262 23.94 b.42.2.1,b.42.2.1 25561,25562 3c7fA 487 25.46 3kb5A 193 26.19 3l6vA 370 26.37 3me7A 170 26.50 1s1dA 331 28.45 b.67.3.1 98344 1kj1D 109 28.46 b.78.1.1 68639 1yrzA 528 28.47 b.29.1.23,b.67.2.1 123948,123949 3l0qA 554 30.88 2ifsA 169 31.77 1h30A 422 32.63 b.29.1.4,b.29.1.4 76604,76605 1knmA 130 33.04 b.42.2.1 72781 1v58A 241 33.13 c.47.1.9,d.17.3.1 108371,108372 1mkeA 152 34.05 b.55.1.4 79231 3cjyA 259 34.34 3gleA 295 35.08 2gkeA 274 35.57 d.21.1.1,d.21.1.1 135329,135330 2fbeA 201 35.93 b.29.1.22 133241 3gldA 295 36.64 1m6kA 251 37.13 e.3.1.1 78695 2ac1A 541 37.45 3lb9A 182 37.82 3hihA 223 37.93 1ly2A 130 38.49 g.18.1.1,g.18.1.1 74335,74336 3ll3A 504 38.51 1wlgA 299 38.88 b.152.1.1 114726 2je8A 848 39.94 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 3bodA 178 41.02 3fvhA 237 41.05 2erfA 209 42.14 b.29.1.4 132287 3k85A 357 42.78 1jpcA 109 43.34 b.78.1.1 27986 3hkxA 283 43.44 2e4qA 109 43.80 2qqjA 325 44.01 3lhnA 126 44.49 3ewlA 142 44.68 2zpdA 190 46.12 3hlkA 446 46.72 3f6kA 685 46.84 1uypA 432 48.40 b.29.1.19,b.67.2.3 100176,100177 3by9A 260 49.05 2yzyA 200 49.18 1zvtA 256 49.54 1bu6O 501 49.96 c.55.1.4,c.55.1.4 33499,33500 2elaA 175 50.04 2nykA 285 50.19 3ezwA 526 50.38 1n9bA 265 51.32 e.3.1.1 85463 1ddmA 135 51.42 b.55.1.2 26993 2a2cA 478 52.29 1yu2A 381 52.83 b.163.1.1,d.169.1.8 124029,124030 2d5fA 493 52.87 3lwaA 183 52.90 2gf6A 135 52.93 d.38.1.1 135077 2ijaA 295 53.05 3ep0A 170 53.15 3kcmA 154 53.96 2fvgA 340 54.33 b.49.3.1,c.56.5.4 134201,134202 2kppA 114 54.91 1avbA 226 55.22 b.29.1.1 24158 2e9qA 459 55.73 3ld7A 101 56.81 2eabA 899 59.07 3lwgA 145 59.89 3fzyA 234 60.32 2wl1A 191 60.51 1ntvA 152 61.13 b.55.1.2 86168 2wjsA 608 61.44 2pimA 141 62.36 3eurA 142 62.37 3bbjA 272 62.80 3fldA 153 63.04 2in3A 216 63.04 2z4iA 233 63.10 1r59O 505 63.13 c.55.1.4,c.55.1.4 111697,111698 2ov9A 216 63.85 d.38.1.5 149034 3gqsA 106 64.36 3hdcA 158 64.37 3khyA 384 64.57 3idaA 587 64.66 1ukfA 188 65.06 d.3.1.10 99488 2f2fC 186 65.38 b.42.2.1 132812 1e30A 155 66.08 b.6.1.1 23016 1vm9A 111 66.81 b.33.1.1 108886 1f89A 291 66.83 d.160.1.1 64988 2w7qA 204 66.84 3fnsA 332 67.27 2qngA 199 68.48 1o7dD 282 69.65 3ihxA 152 71.66 2w1vA 276 72.34 1pvxA 194 72.71 b.29.1.11 24341 2f9sA 151 73.79 c.47.1.10 133168 2dejA 350 74.09 2jxwA 75 74.70 2zuxA 591 75.53 1dhkB 223 75.88 b.29.1.1 24157 1vkdA 338 76.41 b.67.2.4 108644 2qpwA 149 77.96 3gf8A 296 78.64 2d1zA 436 79.02 3f8hA 150 79.43 2ayh 214 79.44 1umwA 237 81.70 d.223.1.2,d.223.1.2 99631,99632 1olzA 663 82.15 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2oxgB 124 82.22 3dzwA 109 82.45 1j1yA 136 82.59 d.38.1.5 90776 1uc7A 125 83.15 c.47.1.1 99163 3gekA 146 83.33 3gg6A 156 83.62 1bfgA 146 83.66 b.42.1.1 25485 1kbpA 432 84.54 b.1.12.1,d.159.1.1 22349,42068 3iosA 150 85.37 3silA 379 86.20 b.68.1.1 27542 3f62B 158 86.70 2bt9A 90 86.73 9gafA 295 87.14 d.153.1.5 42008 2j8gA 339 87.17 b.109.1.1,c.1.8.8 147915,147916 2w40A 503 87.46 1od5A 492 88.51 b.82.1.2,b.82.1.2 86832,86833 3a0eA 110 89.15