# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 1.29e-26 2pbiB 354 5.47e-26 2qc5A 300 7.76e-26 3emhA 318 1.09e-25 2gnqA 336 1.16e-25 2h14A 317 1.34e-25 2bcjB 340 1.81e-25 b.69.4.1 128289 1a0rB 340 1.81e-25 b.69.4.1 27658 1gotB 340 3.71e-25 b.69.4.1 27648 1gxrA 337 5.12e-25 b.69.4.1 70722 1nr0A 611 3.97e-24 b.69.4.1,b.69.4.1 86078,86079 3frxA 319 5.90e-24 3ei4B 436 8.65e-24 3fm0A 345 1.47e-23 1r5mA 425 7.51e-23 2qxvA 361 1.17e-22 1yfqA 342 1.96e-22 b.69.4.2 116680 3ei3B 383 2.53e-22 2ovrB 445 2.55e-22 a.158.1.1,b.69.4.1 145735,145736 3iiwA 365 2.73e-22 3k26A 366 3.33e-22 2oitA 434 3.60e-22 1l0qA 391 4.76e-22 b.1.3.1,b.69.2.3 77644,77645 1ri6A 343 4.79e-22 b.69.11.1 97503 1q7fA 286 4.80e-22 b.68.9.1 96036 1nexB 464 5.87e-22 a.158.1.1,b.69.4.1 80443,80444 3fvzA 329 5.98e-22 3dxkC 372 6.08e-22 3hxjA 330 6.26e-22 1u4cA 349 6.38e-22 b.69.4.2 107666 1k8kC 372 6.56e-22 b.69.4.1 68308 1p22A 435 1.06e-21 a.158.1.1,b.69.4.1 87715,87716 3i2nA 357 2.31e-21 2iaaA 390 2.64e-21 2aq5A 402 2.88e-21 1pguA 615 3.53e-21 b.69.4.1,b.69.4.1 88069,88070 2oajA 902 4.14e-21 1pbyB 337 5.16e-21 b.69.2.2 94422 3hfqA 347 7.86e-21 1sq9A 397 7.91e-21 b.69.4.1 105889 1rwiA 270 9.13e-21 b.68.9.1 97987 2gc7A 386 1.01e-20 b.69.2.1 134954 1yiqA 689 1.08e-20 3dw8B 447 1.17e-20 2agyA 361 1.18e-20 3bwsA 433 1.35e-20 2hesX 330 1.35e-20 2w18A 356 1.53e-20 1jmxB 349 1.78e-20 b.69.2.2 66906 1w6sA 599 1.97e-20 b.70.1.1 114284 3dsmA 328 2.18e-20 2ad6A 571 2.22e-20 b.70.1.1 126568 1kv9A 668 3.27e-20 a.3.1.6,b.70.1.1 73056,73057 3c5mA 396 3.29e-20 2vduB 450 3.49e-20 3c99A 432 4.14e-20 2pm7B 297 5.01e-20 3cfsB 414 5.12e-20 2hqsA 415 6.20e-20 b.68.4.1,c.51.2.1 136662,136663 2ojhA 297 6.34e-20 1lrwA 600 7.06e-20 b.70.1.1 91111 3e5zA 296 9.28e-20 3acpA 417 1.00e-19 1g72A 573 1.09e-19 b.70.1.1 27680 2madH 373 1.41e-19 b.69.2.1 27639 1pjxA 314 1.49e-19 b.68.6.1 104167 3dwlC 377 1.67e-19 2dg1A 333 1.77e-19 b.68.6.1 131493 3gfcA 425 2.37e-19 3greA 437 2.61e-19 1jofA 365 3.97e-19 b.69.10.1 71775 3c75H 426 4.90e-19 2oizA 361 4.99e-19 1kb0A 677 5.15e-19 a.3.1.6,b.70.1.1 68378,68379 3llpA 493 6.65e-19 3ei3A 1158 9.20e-19 3f3fA 351 9.50e-19 2j04B 524 1.43e-18 1s4uX 407 2.52e-18 b.69.4.1 112027 3li5A 314 4.14e-18 1k32A 1045 9.37e-18 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3e0cA 1140 9.59e-18 3hrpA 409 1.18e-17 3dr2A 305 1.35e-17 3fgbA 361 1.83e-17 2bklA 695 2.82e-17 2ghsA 326 3.75e-17 b.68.6.1 135209 2p4oA 306 1.04e-16 b.68.6.3 149216 1cruA 454 1.40e-16 b.68.2.1 27617 2qe8A 343 2.45e-16 2gopA 347 2.73e-16 3g4eA 297 5.35e-16 1orvA 728 8.09e-16 b.70.3.1,c.69.1.24 87354,87355 3i1cA 324 1.01e-15 3li4A 314 1.05e-15 1yr2A 741 1.39e-15 3li3A 314 1.85e-15 1xfdA 723 2.24e-15 b.70.3.1,c.69.1.24 115251,115252 1npeA 267 1.04e-14 b.68.5.1 92032 1mdaH 368 8.18e-14 b.69.2.1 27637 1h2wA 710 1.40e-13 b.69.7.1,c.69.1.4 76596,76597 1v04A 355 1.73e-13 b.68.6.2 100240 2fp8A 322 6.72e-13 3dasA 347 1.92e-11 3kyaA 496 5.77e-11 2ismA 352 1.14e-10 2z3zA 706 2.16e-09 3elqA 571 8.49e-09 2hu5A 582 6.09e-08 b.69.7.2,c.69.1.33 136763,136764 2be1A 339 6.77e-08 2g8sA 353 9.55e-08 2d5lA 706 1.01e-07 2p9wA 334 1.58e-07 2iwaA 266 1.93e-07 1o6gA 710 5.84e-07 b.69.7.1,c.69.1.4 81087,81088 3g0bA 740 7.34e-06 3hacA 728 2.00e-05 2wg3C 463 3.84e-05 1k3iA 656 4.12e-05 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1zgkA 308 0.000165 b.68.11.1 145998 2vpjA 301 0.000824 1x2jA 316 0.000891 b.68.11.1 121643 2fluX 308 0.000907 b.68.11.1 133750 3ii7A 306 0.001419 2qr5A 582 0.001823 b.69.7.2,c.69.1.33 151278,151279 3gc3B 363 0.001898 3hx6A 570 0.003014 2eceA 462 0.007002 2b5nA 323 0.01657 2zwaA 695 0.02965 2sliA 679 0.05344 b.29.1.9,b.68.1.1 24274,27611 2wozA 318 0.06357 3b7fA 394 0.06560 2wftA 458 0.07329 2bibA 547 0.07533 b.109.1.1,d.157.1.8 128581,128582 1utcA 363 0.08159 a.118.1.4,b.69.6.1 99914,99915 2uvkA 357 0.1077 2vw2A 697 0.1153 2pooA 355 0.1207 b.68.3.1 27626 1h6lA 353 0.1815 b.68.3.1 60687 2w20A 471 0.1952 3hxrA 761 0.2178 2v05A 311 0.2688 3kciA 389 0.3828 2jkbA 686 0.3836 1ofzA 312 0.3912 b.68.8.1 86978 3c9zA 258 0.4230 2bf6A 449 0.4545 3h7nA 729 0.4882 1jtdB 273 0.5194 b.69.5.2 67265 2wg4B 457 0.5620 1xipA 388 0.9738 b.69.14.1 115360 2aukA 190 1.049 2ww5A 468 1.068 3kptA 355 1.410 1so7A 382 1.486 b.68.1.1 112106 2ww8A 893 1.781 1wl7A 312 2.068 b.67.2.1 120996 3c12A 138 2.089 3lv4A 456 2.524 3cu9A 314 3.015 1qxmA 300 3.407 b.42.2.1,b.42.2.1 96533,96534 2cn3A 737 3.616 1sqjA 789 3.678 b.69.13.1,b.69.13.1 105918,105919 1q47A 495 3.962 b.69.12.1 104532 2h0bA 184 4.234 3f7fA 729 4.540 1zi0A 307 4.995 2in0A 139 5.897 3kstA 306 5.994 1pz7A 204 6.461 b.29.1.4 95405 3ifrA 508 6.705 1shyB 551 6.908 b.69.12.1,g.16.2.1 105565,105566 3gbtA 504 6.932 2z8rA 591 7.454 3ibzA 191 7.558 2zf5O 497 7.959 1f5fA 205 8.030 b.29.1.4 24222 3c7fA 487 8.125 2w5nA 367 8.651 2uytA 489 8.864 2ebsA 789 9.334 b.69.13.1,b.69.13.1 146772,146773 3d5yA 314 9.387 3gg4A 554 10.72 2hboA 158 10.99 d.38.1.5 136319 1r59O 505 11.03 c.55.1.4,c.55.1.4 111697,111698 3d60A 314 11.10 3d61A 314 11.35 2ihoA 293 11.36 b.42.2.1,d.3.1.18 147681,147682 1uv4A 293 11.53 b.67.2.1 119705 3b3qE 197 12.11 b.29.1.4 154813 3flcO 518 12.24 1xksA 450 12.44 b.69.14.1 115422 3h3nO 506 12.60 2itmA 484 13.10 1ajoA 214 13.84 b.29.1.2 24179 3h46O 506 14.13 3lorA 160 14.38 1v58A 241 14.78 c.47.1.9,d.17.3.1 108371,108372 2d4wA 504 15.23 3kf5A 512 15.52 1qu0A 191 15.67 b.29.1.4 24225 1suuA 312 15.69 b.68.10.1 99006 1mkeA 152 15.78 b.55.1.4 79231 3hz6A 511 16.08 3hkxA 283 16.09 1gyhA 318 16.91 b.67.2.1 70757 1iwlA 182 17.48 b.125.1.1 83757 3ll3A 504 19.33 3hikA 237 19.48 1rwrA 301 19.65 b.80.1.11 97990 1jfuA 186 19.94 c.47.1.10 62940 2ayhA 214 20.25 b.29.1.2 24172 3d7eO 505 21.15 2jxwA 75 21.97 2fbeA 201 22.25 b.29.1.22 133241 2o62A 270 22.26 b.60.1.9,b.60.1.9 148622,148623 1s1dA 331 24.42 b.67.3.1 98344 3kb5A 193 24.65 2ej8A 160 24.76 2w1vA 276 26.29 1wp5A 323 26.46 b.68.10.1 114780 1m6kA 251 26.49 e.3.1.1 78695 2ifsA 169 27.17 1gydB 315 27.38 b.67.2.1 70751 3ah2A 288 27.81 2gkeA 274 27.93 d.21.1.1,d.21.1.1 135329,135330 2e4qA 109 28.25 1f89A 291 29.21 d.160.1.1 64988 1w0pA 781 29.50 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 3l0qA 554 29.78 3me7A 170 29.88 2pz4A 239 30.27 1w8oA 601 31.02 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1ddmA 135 31.33 b.55.1.2 26993 1kj1D 109 31.74 b.78.1.1 68639 3malA 199 32.21 3fzyA 234 33.11 1bu6O 501 33.13 c.55.1.4,c.55.1.4 33499,33500 2j04A 588 33.25 1fwxA 595 33.59 b.6.1.4,b.69.3.1 60069,60070 3f6kA 685 34.42 1vclA 432 34.82 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 3fldA 153 35.02 3cjyA 259 35.66 1vm9A 111 36.24 b.33.1.1 108886 2f2fC 186 36.46 b.42.2.1 132812 2kppA 114 36.77 2zpdA 190 36.91 3b8fA 142 37.06 2z4iA 233 37.08 3ezwA 526 37.24 3bodA 178 38.10 3ep0A 170 39.44 3hihA 223 39.60 3kcmA 154 39.61 1yrzA 528 39.87 b.29.1.23,b.67.2.1 123948,123949 1ly2A 130 39.90 g.18.1.1,g.18.1.1 74335,74336 2a2cA 478 40.01 2iwkA 642 40.85 2ac1A 541 41.78 3idaA 587 42.00 2wjsA 608 42.62 3fvhA 237 42.77 3k85A 357 42.82 3g04C 239 43.34 3eebA 209 44.33 3cmiA 171 44.77 1knmA 130 45.13 b.42.2.1 72781 2w7qA 204 45.94 3ld7A 101 46.64 2je8A 848 46.97 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 3lb9A 182 47.65 3lwaA 183 47.76 3khyA 384 48.26 3ihxA 152 48.48 3hdcA 158 48.79 3ewlA 142 51.11 3gleA 295 51.25 1ybiA 288 52.79 2eabA 899 52.86 2wl1A 191 53.29 1e30A 155 53.69 b.6.1.1 23016 2d5fA 493 54.79 3gldA 295 54.84 2w40A 503 55.22 3gceA 121 55.97 2fvgA 340 56.16 b.49.3.1,c.56.5.4 134201,134202 1o6wA 75 56.48 b.72.1.1,b.72.1.1 81103,81104 3kh7A 176 57.53 3l6vA 370 58.62 1t9fA 187 59.12 b.42.6.1 106710 3lhnA 126 59.61 2f9sA 151 59.64 c.47.1.10 133168 2erfA 209 59.67 b.29.1.4 132287 1at0A 145 59.93 b.86.1.1 28374 2b1kA 168 60.03 2zuxA 591 60.72 3by9A 260 60.94 1jpcA 109 61.83 b.78.1.1 27986 2pimA 141 63.17 3htnA 149 65.51 1h30A 422 66.31 b.29.1.4,b.29.1.4 76604,76605 1wlgA 299 68.01 b.152.1.1 114726 1c3mA 147 68.35 b.77.3.1 27983 1zvtA 256 69.38 2bt9A 90 70.33 1uc7A 125 70.40 c.47.1.1 99163 1t3bA 211 70.64 c.47.1.9,d.17.3.1 106341,106342 3erwA 145 70.70 3db5A 151 71.26 3gg6A 156 73.91 2gf6A 135 74.41 d.38.1.1 135077 3l2oB 312 75.12 2a15A 139 76.32 d.17.4.3 125973 1od5A 492 76.73 b.82.1.2,b.82.1.2 86832,86833 3bbjA 272 78.40 2yzyA 200 79.71 2zyzB 183 80.09 1h8gA 95 80.49 b.109.1.1 65735 2ai4A 119 81.00 b.6.1.7 126816 3i57A 185 81.50 1op4A 159 81.65 b.1.6.1 93397 3lwgA 145 81.73 3gqsA 106 82.63 3knbA 100 83.72 1st9A 143 85.30 c.47.1.10 98987 2f2fA 222 86.09 b.42.2.1 132810 2j8gA 339 86.29 b.109.1.1,c.1.8.8 147915,147916 2v2fF 390 86.47 1u6lA 149 86.98 d.32.1.7 113067 2e9qA 459 87.48 3kldA 384 87.81 2q4nA 166 87.98 b.60.1.8 139871 2p5qA 170 88.13 2zr1B 267 88.53 3ejxA 317 88.84 3hn9A 123 88.95 2in3A 216 88.96 3gl3A 152 89.00