# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2z2nA 299 1.26e-25 2pbiB 354 8.23e-25 2qc5A 300 1.07e-24 2gnqA 336 3.25e-24 1a0rB 340 3.86e-24 b.69.4.1 27658 2bcjB 340 4.22e-24 b.69.4.1 128289 3emhA 318 5.15e-24 2h14A 317 5.30e-24 1gotB 340 6.87e-24 b.69.4.1 27648 1gxrA 337 1.47e-23 b.69.4.1 70722 3frxA 319 3.28e-23 3ei4B 436 6.70e-23 3fm0A 345 9.36e-23 1nr0A 611 1.42e-22 b.69.4.1,b.69.4.1 86078,86079 1r5mA 425 4.32e-22 1yfqA 342 7.91e-22 b.69.4.2 116680 3ei3B 383 9.68e-22 2qxvA 361 1.74e-21 3iiwA 365 1.89e-21 3k26A 366 2.22e-21 1u4cA 349 2.73e-21 b.69.4.2 107666 3i2nA 357 2.93e-21 3dxkC 372 2.99e-21 1ri6A 343 4.22e-21 b.69.11.1 97503 1l0qA 391 4.38e-21 b.1.3.1,b.69.2.3 77644,77645 1k8kC 372 6.14e-21 b.69.4.1 68308 2ovrB 445 6.60e-21 a.158.1.1,b.69.4.1 145735,145736 1nexB 464 8.36e-21 a.158.1.1,b.69.4.1 80443,80444 1pguA 615 1.07e-20 b.69.4.1,b.69.4.1 88069,88070 1q7fA 286 1.44e-20 b.68.9.1 96036 2hesX 330 4.21e-20 2oitA 434 4.21e-20 1p22A 435 4.53e-20 a.158.1.1,b.69.4.1 87715,87716 1pbyB 337 4.73e-20 b.69.2.2 94422 3fvzA 329 6.43e-20 1sq9A 397 8.05e-20 b.69.4.1 105889 2aq5A 402 8.16e-20 2iaaA 390 8.43e-20 3cfsB 414 1.12e-19 3c99A 432 1.13e-19 2pm7B 297 1.25e-19 3dw8B 447 1.29e-19 1rwiA 270 1.39e-19 b.68.9.1 97987 2agyA 361 1.41e-19 3gfcA 425 1.59e-19 3hfqA 347 1.97e-19 1jmxB 349 2.93e-19 b.69.2.2 66906 3e5zA 296 3.19e-19 2oajA 902 3.58e-19 3dsmA 328 3.91e-19 3bwsA 433 4.39e-19 3hxjA 330 5.54e-19 2dg1A 333 5.66e-19 b.68.6.1 131493 2gc7A 386 5.69e-19 b.69.2.1 134954 2w18A 356 6.14e-19 1pjxA 314 6.31e-19 b.68.6.1 104167 3dwlC 377 7.39e-19 3c5mA 396 8.33e-19 3f3fA 351 8.43e-19 2ad6A 571 8.97e-19 b.70.1.1 126568 2ojhA 297 9.07e-19 1g72A 573 1.09e-18 b.70.1.1 27680 3acpA 417 1.15e-18 1jofA 365 1.53e-18 b.69.10.1 71775 2oizA 361 2.96e-18 2hqsA 415 3.09e-18 b.68.4.1,c.51.2.1 136662,136663 2vduB 450 3.09e-18 2madH 373 5.46e-18 b.69.2.1 27639 1kb0A 677 6.13e-18 a.3.1.6,b.70.1.1 68378,68379 1kv9A 668 6.14e-18 a.3.1.6,b.70.1.1 73056,73057 1w6sA 599 7.02e-18 b.70.1.1 114284 1lrwA 600 7.29e-18 b.70.1.1 91111 3greA 437 1.06e-17 3ei3A 1158 1.12e-17 2j04B 524 1.23e-17 1yiqA 689 1.60e-17 3li5A 314 1.71e-17 3c75H 426 1.77e-17 3hrpA 409 2.12e-17 3e0cA 1140 3.26e-17 1s4uX 407 3.93e-17 b.69.4.1 112027 1k32A 1045 8.76e-17 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 3dr2A 305 8.99e-17 3fgbA 361 1.19e-16 2ghsA 326 1.73e-16 b.68.6.1 135209 2p4oA 306 2.31e-16 b.68.6.3 149216 3llpA 493 2.44e-16 2bklA 695 2.71e-16 3li4A 314 9.10e-16 3li3A 314 1.11e-15 3i1cA 324 1.18e-15 2qe8A 343 2.17e-15 3g4eA 297 2.83e-15 1npeA 267 5.09e-15 b.68.5.1 92032 1cruA 454 5.23e-15 b.68.2.1 27617 2gopA 347 5.44e-15 1orvA 728 9.65e-15 b.70.3.1,c.69.1.24 87354,87355 1yr2A 741 1.71e-14 1xfdA 723 4.62e-14 b.70.3.1,c.69.1.24 115251,115252 2fp8A 322 4.03e-13 1mdaH 368 5.11e-13 b.69.2.1 27637 1h2wA 710 5.61e-13 b.69.7.1,c.69.1.4 76596,76597 1v04A 355 9.01e-13 b.68.6.2 100240 3dasA 347 5.39e-12 2ismA 352 2.42e-11 3kyaA 496 3.20e-11 2g8sA 353 2.18e-08 2p9wA 334 3.15e-08 3elqA 571 3.67e-08 2z3zA 706 5.72e-08 2hu5A 582 8.34e-08 b.69.7.2,c.69.1.33 136763,136764 2be1A 339 3.30e-07 2d5lA 706 6.15e-07 1o6gA 710 1.12e-06 b.69.7.1,c.69.1.4 81087,81088 2iwaA 266 1.32e-06 1zgkA 308 5.17e-06 b.68.11.1 145998 1k3iA 656 7.23e-06 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3g0bA 740 1.05e-05 2vpjA 301 1.06e-05 2wg3C 463 1.53e-05 1x2jA 316 2.56e-05 b.68.11.1 121643 3hacA 728 2.66e-05 2fluX 308 3.20e-05 b.68.11.1 133750 3ii7A 306 4.72e-05 2eceA 462 0.000147 2zwaA 695 0.000172 3hx6A 570 0.000445 2qr5A 582 0.000811 b.69.7.2,c.69.1.33 151278,151279 3b7fA 394 0.000999 2uvkA 357 0.001959 2wozA 318 0.002468 3gc3B 363 0.002720 2b5nA 323 0.003719 2pooA 355 0.004523 b.68.3.1 27626 1h6lA 353 0.007790 b.68.3.1 60687 2wftA 458 0.02646 1utcA 363 0.03896 a.118.1.4,b.69.6.1 99914,99915 2wg4B 457 0.08096 2vw2A 697 0.1071 1zi0A 307 0.1115 1q47A 495 0.1207 b.69.12.1 104532 1ofzA 312 0.1783 b.68.8.1 86978 2jkbA 686 0.1849 1xipA 388 0.2335 b.69.14.1 115360 2ebsA 789 0.3009 b.69.13.1,b.69.13.1 146772,146773 1suuA 312 0.3040 b.68.10.1 99006 3cu9A 314 0.3134 1so7A 382 0.3374 b.68.1.1 112106 2sliA 679 0.3600 b.29.1.9,b.68.1.1 24274,27611 2iwkA 642 0.4264 1fwxA 595 0.4484 b.6.1.4,b.69.3.1 60069,60070 2cn3A 737 0.4785 1wl7A 312 0.5235 b.67.2.1 120996 3d61A 314 0.5867 2bf6A 449 0.6810 3c9zA 258 0.7387 1sqjA 789 0.7530 b.69.13.1,b.69.13.1 105918,105919 2w5nA 367 0.8035 1gydB 315 0.8572 b.67.2.1 70751 1jtdB 273 0.8694 b.69.5.2 67265 1wp5A 323 0.8907 b.68.10.1 114780 3lv4A 456 0.9386 3d60A 314 1.295 2w20A 471 1.483 3d5yA 314 1.555 1xksA 450 1.673 b.69.14.1 115422 3h7nA 729 1.800 1uv4A 293 2.004 b.67.2.1 119705 3kciA 389 3.167 3l6vA 370 3.403 1shyB 551 3.618 b.69.12.1,g.16.2.1 105565,105566 1s7jA 262 4.086 d.21.1.2 98647 3c7fA 487 4.555 1qxmA 300 5.470 b.42.2.1,b.42.2.1 96533,96534 1f89A 291 5.569 d.160.1.1 64988 3hxrA 761 5.596 1f5fA 205 5.643 b.29.1.4 24222 3kstA 306 5.886 2j04A 588 5.945 2zuyA 620 6.549 3b3qE 197 6.590 b.29.1.4 154813 1gyhA 318 7.494 b.67.2.1 70757 3idaA 587 7.813 1h30A 422 8.121 b.29.1.4,b.29.1.4 76604,76605 3a3dA 453 8.562 2zuxA 591 9.147 2ex2A 458 9.902 e.3.1.3 132497 2aukA 190 10.13 1t6eX 381 10.92 b.50.1.2 106564 3h6jA 438 11.55 2hboA 158 12.03 d.38.1.5 136319 2w38A 438 12.89 2z8rA 591 12.92 2wl1A 191 13.08 1jfuA 186 14.00 c.47.1.10 62940 3kptA 355 15.14 1w0pA 781 15.53 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1s1dA 331 15.84 b.67.3.1 98344 1ju3A 583 16.86 b.18.1.13,c.69.1.21 67300,67301 2hyxA 352 17.02 3hkxA 283 17.46 1w79A 489 18.94 e.3.1.3 120680 1pz7A 204 19.81 b.29.1.4 95405 2erfA 209 20.09 b.29.1.4 132287 1yrzA 528 20.63 b.29.1.23,b.67.2.1 123948,123949 2bwrA 401 20.86 2jenA 261 20.97 3flpA 217 21.24 3silA 379 21.43 b.68.1.1 27542 3ibzA 191 21.78 1uypA 432 23.05 b.29.1.19,b.67.2.3 100176,100177 3ah2A 288 23.21 3c2uA 538 23.60 1r0rE 274 24.51 c.41.1.1 96735 1xvqA 175 24.60 c.47.1.10 116094 1mkeA 152 25.30 b.55.1.4 79231 3lwaA 183 25.89 3flcO 518 27.68 3k85A 357 27.86 1t6kA 278 28.60 d.21.1.2,d.21.1.2 112261,112262 1t9fA 187 31.23 b.42.6.1 106710 1w8oA 601 31.48 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1wmdA 434 31.74 b.18.1.20,c.41.1.1 109408,109409 2oxgB 124 32.59 3cjyA 259 32.89 1bxoA 323 33.04 b.50.1.2 26805 1usrA 454 33.29 b.68.1.1 99881 1zvtA 256 33.61 3gg4A 554 34.67 3malA 199 35.38 3bodA 178 35.50 1ddmA 135 35.69 b.55.1.2 26993 2ifsA 169 36.08 1ajoA 214 37.26 b.29.1.2 24179 3ezwA 526 38.88 3kh7A 176 38.89 1vkdA 338 38.94 b.67.2.4 108644 3me7A 170 39.66 2w1vA 276 42.50 3c9xA 329 44.53 3f7fA 729 45.07 1kj1D 109 45.13 b.78.1.1 68639 3kb5A 193 46.39 1olzA 663 47.39 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2e9qA 459 47.45 2b1kA 168 47.91 2ej8A 160 48.31 1w50A 411 48.56 b.50.1.2 109173 3kg8A 308 49.08 3k1uA 330 49.73 2gf6A 135 49.74 d.38.1.1 135077 1kkhA 317 50.45 d.14.1.5,d.58.26.3 72645,72646 1oewA 329 50.96 b.50.1.2 86924 1knmA 130 51.40 b.42.2.1 72781 3hikA 237 52.18 2f9sA 151 53.78 c.47.1.10 133168 2vijA 392 53.95 3f6kA 685 54.20 2in0A 139 55.16 1uxzA 131 57.30 b.18.1.10 100170 1es5A 262 58.21 e.3.1.1 42679 1qu0A 191 58.48 b.29.1.4 24225 3k8nA 185 60.05 1avbA 226 61.39 b.29.1.1 24158 3bbjA 272 61.93 2dejA 350 62.10 3a0eA 110 62.81 3iiiA 560 64.51 3lb9A 182 64.70 2pimA 141 65.03 2ov9A 216 65.65 d.38.1.5 149034 1iwlA 182 65.97 b.125.1.1 83757 3jrqA 326 66.13 3iosA 150 66.63 2wjoA 412 67.11 3cpnA 330 67.81 1u1wA 298 68.91 d.21.1.2,d.21.1.2 112957,112958 1pvxA 194 70.74 b.29.1.11 24341 1q98A 165 71.08 c.47.1.10 96253 1oi4A 193 71.63 c.23.16.2 144364 3kvcA 533 71.73 2hq7A 146 72.07 b.45.1.1 136657 1sdjA 310 73.49 d.21.1.2,d.21.1.2 98807,98808 1ukfA 188 74.39 d.3.1.10 99488 1xd5A 112 74.44 b.78.1.1 115155 1gzcA 239 74.46 b.29.1.1 70803 3cjxA 165 74.56 2d1zA 436 74.72 3gl3A 152 75.07 1at0A 145 75.23 b.86.1.1 28374 2h0bA 184 75.39 1to2E 281 75.44 c.41.1.1 112595 3ervA 236 75.94 2a2cA 478 76.66 3fveA 290 77.69 2eabA 899 77.70 1v58A 241 78.84 c.47.1.9,d.17.3.1 108371,108372 2ijaA 295 79.89 2uytA 489 80.30 2nt0A 497 80.71 b.71.1.2,c.1.8.3 138561,138562 2cz9A 350 81.05 1bcoA 327 81.35 b.48.1.1,c.55.3.3 26431,33676 3lorA 160 82.04 1ykjA 394 82.42 c.3.1.2,d.16.1.2 145914,145915 2i9uA 439 82.96 b.92.1.4,c.1.9.9 147572,147573 3cmsA 323 83.04 b.50.1.2 26865 1h4gA 207 84.57 b.29.1.11 70863 2w7qA 204 86.25 1y4wA 518 86.26 b.29.1.19,b.67.2.3 116470,116471 1s14A 194 89.09 d.122.1.2 98329 1h1aA 191 89.62 b.29.1.11 83450