# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3emhA 318 1.17e-05 2gnqA 336 1.33e-05 2bcjB 340 1.42e-05 b.69.4.1 128289 2pbiB 354 1.56e-05 3frxA 319 1.64e-05 1gotB 340 1.68e-05 b.69.4.1 27648 2h14A 317 1.68e-05 1a0rB 340 1.93e-05 b.69.4.1 27658 1gxrA 337 4.05e-05 b.69.4.1 70722 2qc5A 300 5.99e-05 2z2nA 299 7.00e-05 3ei3B 383 7.28e-05 1nr0A 611 8.02e-05 b.69.4.1,b.69.4.1 86078,86079 3ei4B 436 8.93e-05 1l0qA 391 9.18e-05 b.1.3.1,b.69.2.3 77644,77645 2ovrB 445 0.000105 a.158.1.1,b.69.4.1 145735,145736 3fm0A 345 0.000138 1r5mA 425 0.000140 1nexB 464 0.000144 a.158.1.1,b.69.4.1 80443,80444 1pbyB 337 0.000148 b.69.2.2 94422 1pguA 615 0.000211 b.69.4.1,b.69.4.1 88069,88070 3hxjA 330 0.000219 1q7fA 286 0.000230 b.68.9.1 96036 3dxkC 372 0.000243 3dsmA 328 0.000248 3iiwA 365 0.000253 3bwsA 433 0.000259 1jmxB 349 0.000263 b.69.2.2 66906 2qxvA 361 0.000263 3k26A 366 0.000272 1k8kC 372 0.000308 b.69.4.1 68308 2hesX 330 0.000345 1p22A 435 0.000353 a.158.1.1,b.69.4.1 87715,87716 3i2nA 357 0.000500 3dw8B 447 0.000564 1u4cA 349 0.000648 b.69.4.2 107666 1kb0A 677 0.000714 a.3.1.6,b.70.1.1 68378,68379 2pm7B 297 0.000714 1g72A 573 0.000763 b.70.1.1 27680 3fvzA 329 0.000770 1sq9A 397 0.000801 b.69.4.1 105889 1yfqA 342 0.000806 b.69.4.2 116680 3e5zA 296 0.000835 3f3fA 351 0.000842 2dg1A 333 0.000872 b.68.6.1 131493 1s4uX 407 0.000886 b.69.4.1 112027 1ri6A 343 0.000937 b.69.11.1 97503 3c5mA 396 0.000970 1kv9A 668 0.001125 a.3.1.6,b.70.1.1 73056,73057 1pjxA 314 0.001223 b.68.6.1 104167 2aq5A 402 0.001231 1jofA 365 0.001248 b.69.10.1 71775 3c99A 432 0.001256 2agyA 361 0.001297 1lrwA 600 0.001301 b.70.1.1 91111 3greA 437 0.001341 3c75H 426 0.001473 3hfqA 347 0.001492 1w6sA 599 0.001506 b.70.1.1 114284 1yiqA 689 0.001669 2ad6A 571 0.001753 b.70.1.1 126568 2iaaA 390 0.001766 3acpA 417 0.001860 3gfcA 425 0.001996 3cfsB 414 0.002033 2ojhA 297 0.002091 3g4eA 297 0.002203 2w18A 356 0.002265 2gc7A 386 0.002588 b.69.2.1 134954 1rwiA 270 0.002647 b.68.9.1 97987 3dr2A 305 0.002691 3li5A 314 0.002720 3hrpA 409 0.002906 2vduB 450 0.003093 2oizA 361 0.003116 1k32A 1045 0.003155 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2ghsA 326 0.003523 b.68.6.1 135209 2j04B 524 0.003580 3fgbA 361 0.003656 3dwlC 377 0.003968 3i1cA 324 0.004337 2qe8A 343 0.004378 3li4A 314 0.004397 2p4oA 306 0.004730 b.68.6.3 149216 2oajA 902 0.004740 2hqsA 415 0.004878 b.68.4.1,c.51.2.1 136662,136663 3li3A 314 0.005701 2oitA 434 0.007020 3e0cA 1140 0.008585 2bklA 695 0.01045 2gopA 347 0.01130 2madH 373 0.01421 b.69.2.1 27639 3ei3A 1158 0.01563 2ismA 352 0.01762 1npeA 267 0.01827 b.68.5.1 92032 2fp8A 322 0.01854 1cruA 454 0.01917 b.68.2.1 27617 3dasA 347 0.02270 1orvA 728 0.02550 b.70.3.1,c.69.1.24 87354,87355 1yr2A 741 0.02834 1mdaH 368 0.03078 b.69.2.1 27637 2iwaA 266 0.03478 1v04A 355 0.04456 b.68.6.2 100240 1xfdA 723 0.04988 b.70.3.1,c.69.1.24 115251,115252 2g8sA 353 0.05565 2z3zA 706 0.06104 3elqA 571 0.06678 3kyaA 496 0.06756 2d5lA 706 0.09371 1h2wA 710 0.1474 b.69.7.1,c.69.1.4 76596,76597 2eceA 462 0.1578 2p9wA 334 0.2461 1k3iA 656 0.3574 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3hacA 728 0.4497 1o6gA 710 0.4577 b.69.7.1,c.69.1.4 81087,81088 2zwaA 695 0.4604 3g0bA 740 0.4644 3gc3B 363 0.4885 2wg3C 463 0.4939 3ii7A 306 0.5736 2hu5A 582 0.5838 b.69.7.2,c.69.1.33 136763,136764 2iwkA 642 0.5871 3llpA 493 0.6339 2fluX 308 0.7354 b.68.11.1 133750 1zgkA 308 0.7575 b.68.11.1 145998 1x2jA 316 0.8231 b.68.11.1 121643 1fwxA 595 0.8456 b.6.1.4,b.69.3.1 60069,60070 2qr5A 582 0.9476 b.69.7.2,c.69.1.33 151278,151279 2b5nA 323 0.9675 1utcA 363 1.213 a.118.1.4,b.69.6.1 99914,99915 2vpjA 301 1.335 1h6lA 353 2.300 b.68.3.1 60687 2wftA 458 2.303 3hx6A 570 2.375 2pooA 355 2.434 b.68.3.1 27626 3b7fA 394 3.104 1suuA 312 3.302 b.68.10.1 99006 2be1A 339 3.696 2biwA 490 3.806 2wozA 318 3.966 2j04A 588 3.998 2uvkA 357 4.368 2wg4B 457 4.386 1xksA 450 5.184 b.69.14.1 115422 1txvA 452 6.444 1genA 218 8.448 b.66.1.1 27536 3c7xA 196 11.09 2w38A 438 11.61 1zi0A 307 12.00 2ebsA 789 12.11 b.69.13.1,b.69.13.1 146772,146773 3fsnA 533 12.16 1q47A 495 12.52 b.69.12.1 104532 1wp5A 323 13.03 b.68.10.1 114780 2zuxA 591 13.05 2vw2A 697 13.12 2cn3A 737 13.54 2z8rA 591 15.00 2jkbA 686 15.38 3kvcA 533 16.84 1xipA 388 17.47 b.69.14.1 115360 2b4wA 315 17.69 b.67.2.5 127866 3h6jA 438 19.51 2vdrA 452 20.58 2bf6A 449 22.03 1itvA 195 22.04 b.66.1.1 76791 1usrA 454 22.11 b.68.1.1 99881 2w5nA 367 22.86 2zuyA 620 23.53 1pexA 207 24.45 b.66.1.1 27540 1jtdB 273 26.31 b.69.5.2 67265 1shyB 551 27.93 b.69.12.1,g.16.2.1 105565,105566 3a21A 614 32.36 2bibA 547 32.78 b.109.1.1,d.157.1.8 128581,128582 1gydB 315 34.39 b.67.2.1 70751 1hxnA 219 34.55 b.66.1.1 27529 1w8oA 601 35.03 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1s1dA 331 36.28 b.67.3.1 98344 1kshB 152 37.97 b.1.18.8 72915 1vkdA 338 39.77 b.67.2.4 108644 3d61A 314 40.35 3lp9A 227 42.72 3cu9A 314 42.96 2aukA 190 48.50 1wl7A 312 50.85 b.67.2.1 120996 1sqjA 789 51.12 b.69.13.1,b.69.13.1 105918,105919 2vsmA 416 51.24 1wcqA 601 51.59 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 3bmvA 683 51.69 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 155416,155417,155418,155419 2w20A 471 51.83 3cpnA 330 53.12 1ivgA 388 53.77 b.68.1.1 27578 3f7fA 729 53.87 3kciA 389 54.10 1cx4A 305 55.22 b.82.3.2,b.82.3.2 59099,59100 1zvtA 256 57.22 1yifA 533 57.40 b.29.1.23,b.67.2.1 123283,123284 1v3eA 431 57.94 b.68.1.1 100287 3k1uA 330 60.33 1qhoA 686 60.48 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1ytqA 204 60.68 b.11.1.1,b.11.1.1 124012,124013 1gyhA 318 60.91 b.67.2.1 70757 1xf1A 926 60.98 3d5yA 314 61.11 1qxmA 300 61.14 b.42.2.1,b.42.2.1 96533,96534 3kptA 355 64.01 1so7A 382 64.02 b.68.1.1 112106 2v05A 311 64.20 1ofzA 312 64.33 b.68.8.1 86978 2pvaA 345 64.52 d.153.1.3 41850 2sliA 679 68.29 b.29.1.9,b.68.1.1 24274,27611 3dghA 483 71.55 3d60A 314 77.85 2uzxB 727 78.22 1ji6A 589 79.55 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2ww5A 468 80.22 1fecA 490 81.44 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 3bp8A 406 81.52 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 3l6vA 370 81.58 3kstA 306 81.58 1z4vA 532 84.18 1nscA 390 87.97 b.68.1.1 27591 3c9zA 258 89.12