# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3hxjA 307 3.844e-09 3fvzA 330 1.344e-06 2z2nA 294 9.094e-06 1l0qA 392 1.072e-05 b.1.3.1 77644 b.69.2.3 77645 2qc5A 299 7.010e-05 1q7fA 280 7.030e-05 b.68.9.1 96036 1pbyB 338 1.832e-04 b.69.2.2 94422 3li3A 314 2.376e-04 3hrpA 401 4.780e-04 2p4oA 303 8.342e-04 b.68.6.3 149216 1kb0A 671 9.898e-04 a.3.1.6 68378 b.70.1.1 68379 1ri6A 334 1.392e-03 b.69.11.1 97503 3e5zA 291 1.715e-03 2bbkH 356 1.807e-03 2bbkH b.69.2.1 27634 3li4A 313 1.880e-03 1kv9A 665 2.232e-03 a.3.1.6 73056 b.70.1.1 73057 2ad6A 572 2.644e-03 b.70.1.1 126568 1crzA 404 2.867e-03 1crzA b.68.4.1 27629 c.51.2.1 33211 3bwsA 408 3.371e-03 3li5A 313 3.782e-03 1pjxA 315 4.105e-03 b.68.6.1 104167 2dg1A 322 4.508e-03 b.68.6.1 131493 4aahA 572 7.626e-03 4aahA b.70.1.1 27678 1w6sA 596 8.100e-03 b.70.1.1 114284 1jmxB 340 1.384e-02 b.69.2.2 66906 1yiqA 685 3.150e-02 1e1aA 313 3.333e-02 1e1aA b.68.6.1 59155 2w18A 307 3.809e-02 3i1cA 315 4.051e-02 3fgbA 350 5.003e-02 1pguA 607 5.148e-02 b.69.4.1 88069 b.69.4.1 88070 3dr2A 300 8.960e-02 3hfqA 342 9.103e-02 1nr0A 611 9.469e-02 b.69.4.1 86078 b.69.4.1 86079 3elqA 565 1.371e-01 1gxrA 336 1.543e-01 b.69.4.1 70722 1g72A 572 1.602e-01 4aahA b.70.1.1 27680 2fp8A 303 1.703e-01 1a0rB 340 1.817e-01 1tbgA b.69.4.1 27658 2gc7A 383 1.943e-01 b.69.2.1 134954 2h14A 304 2.655e-01 1rwiA 257 2.955e-01 b.68.9.1 97987 1r5mA 352 3.048e-01 3ednA 300 3.199e-01 2gnqA 317 3.290e-01 1gotB 340 3.326e-01 1tbgA b.69.4.1 27648 1n6eA 1024 3.810e-01 b.36.1.3 80149 b.68.7.1 80150 b.69.9.1 80151 c.14.1.2 80152 1erjA 351 4.850e-01 1erjA b.69.4.1 27660 1tbgA 341 5.536e-01 1tbgA b.69.4.1 27649 3emhA 301 5.697e-01 2hqsA 413 6.365e-01 b.68.4.1 136662 c.51.2.1 136663 1k8kC 355 6.999e-01 b.69.4.1 68308 3dwlC 337 7.029e-01 2b5nA 313 7.081e-01 2bcjB 340 7.392e-01 b.69.4.1 128289 2pbiB 346 7.713e-01 2ojhA 278 7.963e-01 1nexB 445 8.287e-01 a.158.1.1 80443 b.69.4.1 80444 2ovrB 443 8.366e-01 a.158.1.1 145735 b.69.4.1 145736 1p22A 403 9.528e-01 a.158.1.1 87715 b.69.4.1 87716 3hdcA 151 1.029e+00 3acpA 418 1.071e+00 3g4eA 298 1.098e+00 3greA 409 1.172e+00 2hesX 309 1.293e+00 2ghsA 296 1.312e+00 b.68.6.1 135209 3k26A 361 1.380e+00 3ei4B 369 1.435e+00 1sq9A 379 1.593e+00 b.69.4.1 105889 1lqvA 173 1.662e+00 d.19.1.1 74206 3dw8B 422 1.705e+00 3iiwA 360 1.745e+00 1orvA 729 1.775e+00 b.70.3.1 87354 c.69.1.24 87355 3kyaA 472 1.787e+00 2be1A 302 2.220e+00 3lvaA 235 2.243e+00 3frxA 310 2.246e+00 1jofA 366 2.249e+00 b.69.10.1 71775 1lrwA 601 2.256e+00 b.70.1.1 91111 1g2oA 263 2.259e+00 1b8oA c.56.2.1 60228 1u4cA 323 2.343e+00 b.69.4.2 107666 1h2xA 711 2.405e+00 b.69.7.1 76598 c.69.1.4 76599 1st9A 138 2.516e+00 c.47.1.10 98987 3dxkC 340 2.634e+00 2aq5A 396 2.660e+00 3kcmA 140 2.692e+00 1s4uX 357 2.737e+00 b.69.4.1 112027 2whtA 216 2.756e+00 2jx8A 48 2.960e+00 3lvcA 227 3.050e+00 1xfdA 724 3.370e+00 b.70.3.1 115251 c.69.1.24 115252 2ooxA 129 3.400e+00 d.129.6.2 148940 2hjjA 67 3.478e+00 d.50.3.3 147295 3fm0A 329 3.546e+00 1qksA 560 3.737e+00 1qksA a.3.1.2 15951 b.70.2.1 27710 3ls3A 216 3.797e+00 2x10A 486 3.983e+00 1yfqA 343 4.016e+00 b.69.4.2 116680 2gopA 321 4.302e+00 2gw4B 157 4.395e+00 2qxvA 353 4.490e+00 3hacA 729 4.564e+00 1lu4A 135 4.611e+00 c.47.1.10 91124 2f9sA 139 4.616e+00 c.47.1.10 133168 3e5xA 215 4.633e+00 1e8nA 711 4.824e+00 1qfmA b.69.7.1 27675 c.69.1.4 34643 3cfsB 384 4.974e+00 2vadA 218 5.092e+00 3gfcA 340 5.123e+00 1tcvA 272 5.164e+00 3g0bA 728 5.274e+00 2a46A 218 5.333e+00 2c9iA 226 5.764e+00 1xd5A 113 5.886e+00 b.78.1.1 115155 3gexA 234 5.910e+00 2wsoA 224 5.976e+00 3khsA 265 6.060e+00 2z3zA 652 6.083e+00 3lf4B 160 6.099e+00 2g6yA 214 6.159e+00 3ir8A 214 6.161e+00 2h62C 85 6.223e+00 g.7.1.3 136179 3e6cC 226 6.232e+00 a.4.5.4 158038 b.82.3.2 158039 2hqkA 214 6.746e+00 1xmzA 225 6.859e+00 2pm7B 280 6.986e+00 2e74G 38 7.105e+00 f.23.26.1 132052 3gb3A 230 7.284e+00 1k32A 1024 7.385e+00 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 2p4mA 219 7.454e+00 1sdjA 311 7.473e+00 d.21.1.2 98807 d.21.1.2 98808 3c71A 141 7.606e+00 3i2nA 346 7.647e+00 1wp5A 324 7.676e+00 b.68.10.1 114780 1t6kA 279 7.769e+00 d.21.1.2 112261 d.21.1.2 112262 1u0kA 285 8.239e+00 d.21.1.2 107547 d.21.1.2 107548 2wftA 439 8.318e+00 2h6cA 209 8.388e+00 a.4.5.4 147232 b.82.3.2 147233 1u1wA 279 8.527e+00 d.21.1.2 112957 d.21.1.2 112958 2ggoA 402 8.625e+00 2a50B 168 8.705e+00 1aolA 229 9.031e+00 b.20.1.1 23840 3ip2A 229 9.045e+00 2gw3A 219 9.200e+00 1ym5A 295 9.203e+00 2ie2A 214 9.316e+00 2bbaA 186 9.380e+00 b.18.1.4 146133 1bm8 100 9.428e+00 1bm8 1xssA 224 9.663e+00 1zuxA 220 9.826e+00 1zgoA 218 9.894e+00 3e5tA 229 1.005e+01 3ia1A 144 1.014e+01 3c99A 381 1.021e+01 2hpwA 229 1.029e+01 2vsdA 94 1.034e+01 2v0hA 451 1.080e+01 3cnrA 92 1.086e+01 2vduB 375 1.087e+01 2wiqA 226 1.098e+01 2awkA 225 1.125e+01 3fucA 275 1.142e+01 3e5wA 227 1.163e+01 1a5t 325 1.236e+01 1a5t 3hx1A 104 1.290e+01 3bxaA 224 1.295e+01 2d5lA 666 1.356e+01 1qyaA 294 1.376e+01 d.21.1.2 104653 d.21.1.2 104654 3kh7A 158 1.386e+01 2p9wA 334 1.396e+01 3dohA 376 1.396e+01 3dsgA 95 1.403e+01 2h5oA 215 1.417e+01 1v04A 333 1.424e+01 b.68.6.2 100240 2iwkA 591 1.431e+01 2ib5A 226 1.440e+01 2dddA 224 1.449e+01 1ohmA 45 1.484e+01 j.106.1.1 93025 1whzA 71 1.484e+01 d.50.3.2 114656 2vezA 166 1.484e+01 2icrA 226 1.504e+01 1ewxA 145 1.513e+01 1ewxA c.47.1.10 33062 3f3fA 309 1.529e+01 2c9jA 214 1.573e+01 3dsmA 328 1.584e+01 3lb9A 183 1.758e+01 1qe5A 267 1.764e+01 1b8oA c.56.2.1 33784 2ogrA 224 1.791e+01 2jxwA 76 1.826e+01 2kmvA 186 1.847e+01 3lf3A 219 1.858e+01 1zvtA 246 1.860e+01 3ec1A 312 1.872e+01 2e3dA 287 1.930e+01 2zmuA 214 1.948e+01 1ho8A 448 1.977e+01 1ho8A a.118.1.9 61107 2zuxA 583 1.986e+01 2gnoA 297 2.047e+01 a.80.1.1 135414 c.37.1.20 135415 2wg3C 407 2.056e+01 2h6bA 240 2.059e+01 a.4.5.4 147228 b.82.3.2 147229 1z94A 141 2.071e+01 d.129.3.5 124740 1gln 469 2.074e+01 1gln 2p14A 187 2.131e+01 1vdwA 249 2.136e+01 e.7.1.1 100569 2dd7A 215 2.156e+01 2qrdA 115 2.291e+01 d.129.6.2 151286 3fkfA 142 2.292e+01 1h2wA 711 2.390e+01 b.69.7.1 76596 c.69.1.4 76597 3ewlA 139 2.497e+01 1senA 135 2.509e+01 c.47.1.1 105465 3gl3A 142 2.511e+01 2pa4A 295 2.521e+01 3fc3A 190 2.544e+01 1imbA 273 2.576e+01 1imbA e.7.1.1 42957 2hhmA 273 2.604e+01 1imbA e.7.1.1 42955 1rknA 111 2.615e+01 b.40.1.1 111855 2zo7A 220 2.623e+01 2a0jA 147 2.638e+01 1e3pA 646 2.662e+01 1e3hA a.4.9.1 16258 b.40.4.5 25328 d.14.1.4 37574 d.14.1.4 37575 d.52.3.1 38811 d.101.1.1 40697 d.101.1.1 40698 2vxkA 166 2.738e+01 1q3lA 53 2.752e+01 b.34.13.2 111652 3heiA 175 2.787e+01 1d0nA 730 2.826e+01 1d0nA d.109.1.1 40834 d.109.1.1 40835 d.109.1.1 40836 d.109.1.1 40837 d.109.1.1 40838 d.109.1.1 40839 1ju8A 38 2.836e+01 g.3.6.4 84231 2khsA 122 2.840e+01 2ex3B 197 2.897e+01 a.263.1.1 132500 1q1gA 244 2.898e+01 c.56.2.1 95574 3l6vA 314 2.913e+01 2z3qB 82 2.927e+01 g.18.1.1 154003 3btpA 387 2.962e+01 2j01Z 177 2.967e+01 b.53.1.1 145582 1ft9A 211 2.995e+01 1ft9A a.4.5.4 16107 b.82.3.1 28131 2bklA 677 3.014e+01 3c5mA 377 3.070e+01 3kr9A 223 3.113e+01 2p1mA 91 3.132e+01 2h8aA 122 3.148e+01 f.56.1.1 147239 3erwA 135 3.151e+01 1ziwA 630 3.168e+01 2fmmA 69 3.181e+01 b.34.13.2 133782 1augA 211 3.187e+01 1a2zA c.56.4.1 33798 1lbjA 23 3.192e+01 j.6.1.1 77874 3lorA 155 3.196e+01 1a6jA 151 3.222e+01 1a6jA d.112.1.1 40915 2x7nD 57 3.233e+01 3g65C 259 3.246e+01 1o6jA 150 3.330e+01 c.47.1.10 81089 3c8xA 161 3.390e+01 2dk7A 74 3.422e+01 1suuA 294 3.436e+01 b.68.10.1 99006 2jv4A 54 3.476e+01 3godA 321 3.504e+01 1p1cA 194 3.535e+01 c.66.1.16 87669 2ywiA 191 3.539e+01 3b7fA 369 3.650e+01 2adoA 195 3.655e+01 3ilkA 240 3.670e+01 1j09A 469 3.689e+01 a.97.1.1 77025 c.26.1.1 77026 2zo6A 216 3.694e+01 3cbnA 145 3.777e+01 3brkX 396 3.849e+01 1kngA 145 3.897e+01 c.47.1.10 72777 3i8oA 141 3.982e+01