PFRMAT SS
TARGET T0558
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0558.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 97
METHOD
MODEL 1
M C 0.601
K H 0.636
N H 0.794
F H 0.889
I H 0.902
L H 0.891
L H 0.885
V H 0.889
A H 0.887
L H 0.896
F H 0.902
L H 0.875
V H 0.833
A H 0.613
P H 0.476
F H 0.417
A H 0.379
Q H 0.302
G E 0.296
S E 0.303
S T 0.525
P T 0.688
Q T 0.772
H T 0.651
L E 0.681
L E 0.917
V E 0.945
G E 0.946
G E 0.925
S E 0.845
G E 0.614
W T 0.642
N T 0.708
K E 0.525
I E 0.904
A E 0.967
I E 0.981
I E 0.978
N E 0.960
K E 0.738
D T 0.603
T T 0.790
K T 0.700
E E 0.655
I E 0.924
V E 0.928
W E 0.923
E E 0.879
Y E 0.824
P E 0.614
L T 0.427
E T 0.568
K T 0.595
G T 0.411
W E 0.516
E E 0.723
C E 0.774
N E 0.755
S E 0.809
V E 0.872
A E 0.915
A E 0.895
T E 0.471
K T 0.882
A T 0.911
G T 0.573
E E 0.904
I E 0.985
L E 0.991
F E 0.985
S E 0.897
Y E 0.468
S T 0.827
K T 0.763
G E 0.705
A E 0.950
K E 0.976
M E 0.980
I E 0.968
T E 0.650
R T 0.952
D T 0.975
G T 0.929
R E 0.441
E E 0.903
L E 0.949
W E 0.918
N E 0.800
I E 0.654
A E 0.483
A T 0.523
P T 0.642
A T 0.673
G T 0.458
C E 0.456
E E 0.718
M E 0.885
Q E 0.855
T E 0.912
A E 0.928
R E 0.938
I E 0.889
L T 0.487
P T 0.924
D T 0.967
G T 0.914
N C 0.607
A E 0.920
L E 0.974
V E 0.974
A E 0.916
W E 0.838
C E 0.478
G T 0.663
H T 0.813
P T 0.787
S T 0.440
T E 0.892
I E 0.975
L E 0.987
E E 0.979
V E 0.933
N T 0.633
M T 0.976
K T 0.984
G T 0.916
E E 0.602
V E 0.944
L E 0.967
S E 0.952
K E 0.928
T E 0.899
E E 0.773
F E 0.457
E C 0.369
T T 0.452
G T 0.527
I T 0.542
E T 0.579
R T 0.614
P T 0.460
H T 0.328
A T 0.317
Q E 0.400
F E 0.560
R E 0.573
Q E 0.734
I E 0.840
N E 0.882
K E 0.882
N T 0.505
K T 0.938
K T 0.976
G T 0.925
N C 0.497
Y E 0.944
L E 0.960
V E 0.952
P E 0.885
L E 0.770
F T 0.445
A T 0.686
T T 0.831
S T 0.659
E E 0.885
V E 0.973
R E 0.984
E E 0.982
I E 0.955
A T 0.511
P T 0.976
N T 0.988
G T 0.945
Q C 0.460
L E 0.945
L E 0.969
N E 0.963
S E 0.928
V E 0.892
K E 0.758
L E 0.451
S T 0.687
G T 0.717
T T 0.368
P E 0.533
F E 0.758
S E 0.899
S E 0.930
A E 0.951
F E 0.953
L E 0.655
D T 0.937
N T 0.975
G T 0.942
D E 0.451
C E 0.962
L E 0.985
V E 0.985
A E 0.967
C E 0.864
G E 0.443
D T 0.775
A T 0.882
H T 0.711
C E 0.846
F E 0.968
V E 0.987
Q E 0.992
L E 0.977
N E 0.931
L T 0.757
E T 0.962
S T 0.965
N T 0.910
R E 0.654
I E 0.950
V E 0.970
R E 0.968
R E 0.915
V E 0.842
N T 0.392
A T 0.714
N T 0.767
D T 0.763
I T 0.678
E T 0.570
G T 0.527
V T 0.364
Q E 0.379
L E 0.597
F E 0.645
F E 0.607
V E 0.423
A T 0.480
Q E 0.495
L E 0.822
F E 0.903
P E 0.866
L T 0.594
Q T 0.925
N T 0.942
G T 0.799
G C 0.650
L E 0.947
Y E 0.977
I E 0.966
C E 0.766
N E 0.339
W T 0.630
Q T 0.651
G T 0.607
H T 0.395
D E 0.492
R E 0.645
E E 0.746
A E 0.714
G E 0.623
K T 0.515
G T 0.781
K T 0.777
H T 0.571
P E 0.550
Q E 0.883
L E 0.971
V E 0.982
E E 0.982
I E 0.972
D E 0.623
S T 0.936
E T 0.971
G T 0.928
K C 0.494
V E 0.936
V E 0.972
W E 0.982
Q E 0.955
L E 0.842
N E 0.358
D T 0.574
K T 0.752
V T 0.735
K T 0.567
F E 0.568
G E 0.739
M E 0.898
I E 0.914
S E 0.852
T E 0.865
I E 0.863
C E 0.827
P E 0.638
I C 0.593
R C 0.820
E C 0.948
END