Best Alignments for T0557

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
3lmmA	2.7492e-16	3lmmA/T0557-3lmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3d9rA	2.3800e+01	3d9rA/T0557-3d9rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.27
1wcuA	2.4675e+01	1wcuA/T0557-1wcuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dmmA	2.5537e+01	1dmmA/T0557-1dmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.3
2cxcA	2.7995e+01	2cxcA/T0557-2cxcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tuhA	3.0376e+01	1tuhA/T0557-1tuhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.11
3ebtA	3.2431e+01	3ebtA/T0557-3ebtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.9
3m05A	4.4219e+01	3m05A/T0557-3m05A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1oh0A	5.7005e+01	1oh0A/T0557-1oh0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.3
1nwwA	5.8629e+01	1nwwA/T0557-1nwwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.8
3k0zA	6.1800e+01	3k0zA/T0557-3k0zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cfmA	6.7023e+01	2cfmA/T0557-2cfmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3h0dA	6.7884e+01	3h0dA/T0557-3h0dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3hx8A	7.1088e+01	3hx8A/T0557-3hx8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g2kA	7.8017e+01	2g2kA/T0557-2g2kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c8nA	7.8310e+01	3c8nA/T0557-3c8nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3fkaA	7.8701e+01	3fkaA/T0557-3fkaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3g8zA	7.9552e+01	3g8zA/T0557-3g8zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3fgyA	8.0489e+01	3fgyA/T0557-3fgyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3ec9A	8.0626e+01	3ec9A/T0557-3ec9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001