Best Alignments for T0557

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
3lmmA	2.9911e-12	3lmmA/T0557-3lmmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3kg0A	3.4852e+01	3kg0A/T0557-3kg0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1widA	4.3485e+01	1widA/T0557-1widA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wlfA	4.9656e+01	1wlfA/T0557-1wlfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3hx9A	5.0162e+01	3hx9A/T0557-3hx9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2q22A	5.1860e+01	2q22A/T0557-2q22A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.365.1.1
3kxrA	5.3021e+01	3kxrA/T0557-3kxrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1o51A	5.3096e+01	1o51A/T0557-1o51A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2jbhA	5.4213e+01	2jbhA/T0557-2jbhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3l2bA	5.8751e+01	3l2bA/T0557-3l2bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yavA	5.8814e+01	1yavA/T0557-1yavA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ca9A	6.1165e+01	2ca9A/T0557-2ca9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1skoB	6.5833e+01	1skoB/T0557-1skoB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3lqnA	6.7440e+01	3lqnA/T0557-3lqnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t3bA	6.7541e+01	1t3bA/T0557-1t3bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.9 d.17.3.1
2p8rA	6.8100e+01	2p8rA/T0557-2p8rA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cpgA	7.0016e+01	2cpgA/T0557-2cpgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c5xA	7.0606e+01	3c5xA/T0557-3c5xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1b01A	7.0635e+01	1b01A/T0557-1b01A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vetB	7.0688e+01	1vetB/T0557-1vetB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001