# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	1.28e-13		
1t3bA	211	0.4742	c.47.1.9,d.17.3.1	106341,106342
1njrA	284	5.864	c.50.1.2	103858
1tc5A	194	9.391	c.110.1.1	106752
1o5oA	221	13.14	c.61.1.1	92509
1cnvA	299	14.37	c.1.8.5	28989
3ebvA	302	14.78		
1pfzA	380	15.86	b.50.1.2	26881
2gsjA	271	18.59		
3b7yA	153	19.09		
1wcuA	153	20.34		
3fnsA	332	28.29		
1w5qA	337	31.05		
1w5nA	337	33.66		
3h2bA	203	34.23		
3merA	202	36.24		
2f8aA	208	42.18	c.47.1.10	133119
1a0iA	348	50.40	b.40.4.6,d.142.2.1	25363,41577
2v1mA	169	51.06		
1wmzA	140	52.40	d.169.1.1	109422
2vmhA	151	53.16	b.18.1.33	153327
2r48A	106	57.41	c.44.2.2	151575
2bo9A	308	59.60	c.56.5.1	128897
3bpuA	88	61.09		
2hvmA	273	61.33	c.1.8.5	28985
1w2tA	432	62.88	b.29.1.19,b.67.2.3	120607,120608
2bjuA	453	64.58	b.50.1.2	128633
3gqjA	261	67.89		
3c9xA	329	67.93		
1y9zA	441	68.93		
2bw2A	140	71.15		
3g6zA	341	76.56		
2r4qA	106	77.61	c.44.2.2	151580
4fiv	113	78.71		
1qppA	218	81.30	b.1.11.1,b.7.2.1	22320,23202
1b4eA	323	82.95	c.1.10.3	29186
1v58A	241	86.60	c.47.1.9,d.17.3.1	108371,108372
1nlqA	108	88.00	b.121.3.1	85853
2if1A	126	89.54	d.64.1.1	39547