# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	5.76e-10		
1tc5A	194	32.16	c.110.1.1	106752
1wcuA	153	38.54		
2cfmA	561	38.97		
2hivA	621	42.35		
3merA	202	52.85		
2vmhA	151	60.61	b.18.1.33	153327
1t3bA	211	61.44	c.47.1.9,d.17.3.1	106341,106342
3kptA	355	62.83		
1w2tA	432	73.65	b.29.1.19,b.67.2.3	120607,120608
2qapA	391	79.34	c.1.10.1	150320
2f8aA	208	83.55	c.47.1.10	133119
1wmzA	140	88.30	d.169.1.1	109422