# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	9.01e-08		
3citA	160	3.892		
2gu3A	136	5.088	d.17.1.6,d.17.1.6	147178,147179
3dbxA	289	5.684		
2a6tA	271	8.196	a.242.1.1,d.113.1.7	126309,126310
2pagA	135	9.152	d.369.1.1	149343
1om4A	422	11.93	d.174.1.1	87067
2wvvA	450	13.62		
1d0cA	444	14.09	d.174.1.1	64769
1ed5A	444	20.89	d.174.1.1	42530
3fgyA	135	21.92		
1s98A	107	22.70	b.124.1.1	105377
1k4nA	192	25.60	d.32.1.5	72059
3dmmA	275	29.09		
1htwA	158	29.47	c.37.1.18	71083
1cd0A	111	29.88	b.1.1.1	20559
1r94A	118	31.51	b.124.1.1	97251
2g3mA	693	33.16		
1eg9B	194	34.69	d.17.4.4	38120
3e1eA	141	34.72		
1roaA	122	37.66	d.17.1.2	105024
1kcvH	217	37.89	b.1.1.1,b.1.1.2	72315,72316
1o7nB	194	38.71	d.17.4.4	81164
2qsrA	173	39.44		
3bwaA	276	39.88	b.1.1.2,d.19.1.1	155683,155684
2qdfA	335	40.50		
2bmoB	194	42.88	d.17.4.4	128806
2p8tA	200	43.21	a.4.5.72,d.74.4.2	149315,149316
2a9kB	223	44.18	d.166.1.1	126443
3lzfH	230	46.33		
3ebyA	163	47.71	d.17.4.4	158087
2bvpA	276	50.54	b.1.1.2,d.19.1.1	129291,129292
2z9eA	167	52.36		
3bw8A	217	53.95		
2gwfB	134	54.94	d.345.1.1	145229
3d25A	274	56.25		
2coqA	108	57.84		
3e6fA	274	60.33		
3kyoA	273	60.91		
1k12A	158	63.24	b.18.1.15	71978
2c8eE	211	63.78		
2gbwB	174	64.80		
1a1oA	276	68.77	b.1.1.2,d.19.1.1	20751,38265
1g8aA	227	71.90	c.66.1.3	90506
1tu1A	148	72.05	d.107.1.3	107316
1jk8B	190	73.24	b.1.1.2,d.19.1.1	63147,63148
3kynA	275	74.83		
1zhsA	113	75.47		
3glaA	100	76.83		
2ckfB	174	77.44		
1a1nA	276	77.58	b.1.1.2,d.19.1.1	20755,38267
3f1tA	148	77.65		
1zvhA	134	79.29	b.1.1.1	144772
3c5jB	190	84.41		
1m7vA	363	84.53	d.174.1.1	78748
3fpnB	106	86.43		
2avxA	171	88.12		
2zjrG	174	89.19	c.21.1.1	154560