Best Alignments for T0557

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
3lmmA	7.9228e-18	3lmmA/T0557-3lmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tuhA	1.0000e+01	1tuhA/T0557-1tuhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.11
3d9rA	1.0521e+01	3d9rA/T0557-3d9rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.27
1wcuA	1.3242e+01	1wcuA/T0557-1wcuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cxcA	1.6547e+01	2cxcA/T0557-2cxcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dmmA	2.3117e+01	1dmmA/T0557-1dmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.3
3ebtA	2.3827e+01	3ebtA/T0557-3ebtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.9
1nwwA	2.8390e+01	1nwwA/T0557-1nwwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.8
3fkaA	3.0851e+01	3fkaA/T0557-3fkaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1iwdA	3.4234e+01	1iwdA/T0557-1iwdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.3.1.1
3m05A	3.5353e+01	3m05A/T0557-3m05A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1r3eA	3.6550e+01	1r3eA/T0557-1r3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.122.1.1 d.265.1.2
1shyB	4.8665e+01	1shyB/T0557-1shyB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.69.12.1 g.16.2.1
2dwcA	4.8923e+01	2dwcA/T0557-2dwcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2wvbA	4.8970e+01	2wvbA/T0557-2wvbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cfmA	4.9505e+01	2cfmA/T0557-2cfmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3gfkA	4.9729e+01	3gfkA/T0557-3gfkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a15A	5.2591e+01	2a15A/T0557-2a15A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.3
2r2zA	5.5386e+01	2r2zA/T0557-2r2zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.145.1.4
3g8zA	5.5881e+01	3g8zA/T0557-3g8zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001