# List of top-scoring protein chains for T0557.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	6.25e-06		
1wcuA	153	12.75		
1hh1A	143	24.99	c.52.1.18	61036
2av9A	147	38.64	d.38.1.1	127365
2o5uA	148	38.77	d.38.1.1	148616
2o6tA	149	38.93	d.38.1.1	148637
3k4iA	244	42.16		
2z8fA	412	47.34		
2v25A	259	50.91		
1vqzA	341	57.71	d.224.1.3,d.104.1.3	120426,120427
3h0dA	155	81.02		
3dvnA	217	85.51	b.1.1.1,b.1.1.2	157894,157895
3eo0A	215	85.96		
3dvgA	217	86.16	b.1.1.1,b.1.1.2	157888,157889
3fy3A	236	88.21		
2pnqA	467	88.97