# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	5.23e-16		
1wcuA	153	3.967		
2cxcA	144	5.987		
1tuhA	156	10.19	d.17.4.11	107345
1dmmA	131	10.51	d.17.4.3	38114
3d9rA	135	11.14	d.17.4.27	157459
2g2kA	170	11.67		
3fkaA	120	12.35		
3m05A	114	12.59		
2pvuA	272	14.02		
2g72A	289	16.86	c.66.1.15	134724
2r2zA	93	19.33	d.145.1.4	151544
1r3eA	309	23.53	b.122.1.1,d.265.1.2	96907,96908
1k8wA	327	24.13	b.122.1.1,d.265.1.2	83094,90388
3d5pA	144	24.25		
2cfmA	561	25.06		
2wvbA	148	26.02		
1i12A	160	29.14	d.108.1.1	61515
1qw2A	102	32.26	d.249.1.1	96456
1iznA	286	32.45	e.43.1.1	83847
1hl9A	449	32.85	b.71.1.3,c.1.8.11	90650,90651
3h0dA	155	34.66		
2dwcA	433	35.91		
1i4aA	318	38.46	a.65.1.1	61681
1tkeA	224	42.73	d.15.10.1,d.67.1.1	112470,112471
3kolA	156	46.39		
1nwwA	149	49.24	d.17.4.8	86306
2hivA	621	51.55		
2gu3A	136	51.66	d.17.1.6,d.17.1.6	147178,147179
3blzA	128	51.93	d.17.4.14	155403
2dg5B	190	53.43		
3ebtA	132	54.63	d.17.4.9	158086
3dm8A	143	54.84	d.17.4.20	157804
2ia4A	287	54.97		
2a15A	139	58.34	d.17.4.3	125973
2ieeA	271	59.14		
2jheA	190	59.22		
2cclA	158	62.26	b.2.2.2	130248
2zxdA	455	62.60		
2x8xX	235	67.14		
3gfkA	131	67.38		
2wvfA	148	68.23		
2awpA	198	72.32		
2hyvA	308	75.54		
1oh0A	131	77.64	d.17.4.3	87004
1d8wA	426	78.85	c.1.15.2	29394
3k50A	403	81.59		
3gwrA	144	82.20		
1yiiA	320	82.72		
3g8zA	148	82.74		
1shyB	551	84.05	b.69.12.1,g.16.2.1	105565,105566
1xt8A	292	86.52	c.94.1.1	122293
2rgqA	144	87.15	d.17.4.25	152018
3bfrA	215	87.76		
1iwdA	215	87.96	d.3.1.1	83756
3c8nA	356	88.07