# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	8.90e-16		
1wcuA	153	5.334		
1tuhA	156	5.344	d.17.4.11	107345
3d9rA	135	7.190	d.17.4.27	157459
2cxcA	144	10.82		
3fkaA	120	13.76		
1dmmA	131	14.56	d.17.4.3	38114
1qw2A	102	14.74	d.249.1.1	96456
3d5pA	144	15.62		
2wvbA	148	17.37		
3m05A	114	19.77		
2g72A	289	21.33	c.66.1.15	134724
2cfmA	561	21.57		
1iznA	286	24.81	e.43.1.1	83847
1d8wA	426	29.74	c.1.15.2	29394
1nwwA	149	34.63	d.17.4.8	86306
2dwcA	433	34.78		
2a15A	139	36.13	d.17.4.3	125973
2pvuA	272	39.51		
1i4aA	318	40.21	a.65.1.1	61681
3dm8A	143	41.51	d.17.4.20	157804
3g8zA	148	42.00		
2gu3A	136	42.07	d.17.1.6,d.17.1.6	147178,147179
3ebtA	132	44.51	d.17.4.9	158086
2r2zA	93	44.90	d.145.1.4	151544
2rgqA	144	46.04	d.17.4.25	152018
1r3eA	309	47.48	b.122.1.1,d.265.1.2	96907,96908
2ia4A	287	51.48		
3h0dA	155	52.79		
2wvfA	148	53.47		
2g2kA	170	54.83		
3dmcA	134	54.86	d.17.4.10	157805
1k8wA	327	58.54	b.122.1.1,d.265.1.2	83094,90388
2awpA	198	58.71		
1x9nA	688	62.25	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
2hivA	621	62.95		
3gwrA	144	64.55		
1iwdA	215	66.26	d.3.1.1	83756
3hx8A	129	66.46		
3lmsA	309	71.72		
1hl9A	449	71.96	b.71.1.3,c.1.8.11	90650,90651
1gl6A	436	73.89	c.37.1.11	70259
2hyvA	308	77.88		
1yiiA	320	81.67		
1gwmA	153	86.57	b.18.1.19	83348
1i12A	160	87.61	d.108.1.1	61515