# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	5.13e-14		
2cxcA	144	9.252		
3d9rA	135	9.346	d.17.4.27	157459
1r3eA	309	11.41	b.122.1.1,d.265.1.2	96907,96908
1qw2A	102	11.95	d.249.1.1	96456
1k8wA	327	13.18	b.122.1.1,d.265.1.2	83094,90388
1wcuA	153	13.27		
1dmmA	131	14.75	d.17.4.3	38114
2g72A	289	17.49	c.66.1.15	134724
3laeA	81	18.15		
1nwwA	149	18.84	d.17.4.8	86306
3dgeA	258	20.32		
2r2zA	93	25.75	d.145.1.4	151544
1tuhA	156	26.10	d.17.4.11	107345
3fkaA	120	27.95		
2amhA	207	32.05	c.51.4.2	127019
2g2kA	170	32.11		
3ebtA	132	32.66	d.17.4.9	158086
2nygA	273	33.68	c.140.1.2	148514
1efpB	252	34.66	c.26.2.3	31636
3c6cA	316	36.43		
3llbA	83	36.91		
1oh0A	131	37.07	d.17.4.3	87004
2o1rA	81	40.31	d.145.1.4	148549
3fgyA	135	42.50		
2ek0A	90	42.82		
2dt8A	280	43.44		
3bfrA	215	46.62		
3m05A	114	47.22		
2awpA	198	47.90		
2pvuA	272	48.28		
2dwcA	433	48.76		
1iwdA	215	48.82	d.3.1.1	83756
3e02A	311	53.32		
3d5pA	144	53.52		
1d8wA	426	56.00	c.1.15.2	29394
3g8zA	148	56.40		
2i62A	265	60.30		
1i4aA	318	61.64	a.65.1.1	61681
2gojA	197	63.92		
1o97C	264	64.00	c.26.2.3	81232
3lmsA	309	68.07		
1ohpA	125	69.35	d.17.4.3	118702
3elnA	200	71.05	b.82.1.19	158185
2wvbA	148	71.14		
1ro0A	216	72.91	d.264.1.2	97664
2osoA	163	72.92	d.278.1.3	149006
1o97D	320	73.43	c.26.2.3,c.31.1.2	81233,81234
3e4fA	265	73.89		
1dtdA	303	74.08	c.56.5.1	33823
2uy2A	294	74.54		
2rcvA	202	75.71		
1iscA	192	77.52	a.2.11.1,d.44.1.1	15733,38726
3fx6A	307	78.30		
1i12A	160	78.97	d.108.1.1	61515
2wz1A	219	79.20		
2rfrA	155	79.51	d.17.4.28	152000
2dg5B	190	79.90		
1uerA	191	80.79	a.2.11.1,d.44.1.1	107790,107791
1iznA	286	81.97	e.43.1.1	83847
1ro2A	216	83.19	d.264.1.2	97665
3g98A	111	84.45		
3fjuA	307	84.50		
2p13A	90	86.66	d.145.1.4	149152
2a15A	139	88.75	d.17.4.3	125973