# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	6.66e-17		
2cxcA	144	4.821		
1wcuA	153	5.147		
1tuhA	156	5.722	d.17.4.11	107345
2r2zA	93	7.498	d.145.1.4	151544
3ebtA	132	11.78	d.17.4.9	158086
1iwdA	215	14.93	d.3.1.1	83756
1shyB	551	16.71	b.69.12.1,g.16.2.1	105565,105566
1dmmA	131	18.00	d.17.4.3	38114
3m05A	114	18.09		
3d9rA	135	18.47	d.17.4.27	157459
3llbA	83	19.50		
3gfkA	131	19.61		
2cfmA	561	19.79		
3laeA	81	19.98		
3fkaA	120	20.71		
1r3eA	309	22.72	b.122.1.1,d.265.1.2	96907,96908
1k8wA	327	24.90	b.122.1.1,d.265.1.2	83094,90388
2dg5B	190	26.23		
2wvbA	148	30.22		
3dm8A	143	30.96	d.17.4.20	157804
1xt8A	292	31.13	c.94.1.1	122293
2ia4A	287	32.52		
3h0dA	155	33.48		
1s3cA	141	34.28		
3k7nA	397	34.32		
2pliA	91	35.26	d.145.1.4	149630
3mbfA	342	35.94		
2awpA	198	39.60		
1nwwA	149	39.90	d.17.4.8	86306
2vhaA	287	40.65		
1gwmA	153	43.38	b.18.1.19	83348
1i12A	160	44.27	d.108.1.1	61515
2wvfA	148	44.35		
2pvuA	272	44.39		
1i4aA	318	45.08	a.65.1.1	61681
2r41A	110	46.10		
2dwcA	433	46.94		
3k7lA	422	47.54		
1qw2A	102	49.87	d.249.1.1	96456
3c8nA	356	50.34		
3d5pA	144	51.46		
2o1rA	81	51.69	d.145.1.4	148549
1m6kA	251	52.36	e.3.1.1	78695
3d7rA	326	55.66		
1iznA	286	56.23	e.43.1.1	83847
3g8zA	148	56.55		
1oh0A	131	56.70	d.17.4.3	87004
2g72A	289	58.82	c.66.1.15	134724
2v95A	371	63.67		
3fz4A	120	64.62		
2x8xX	235	66.53		
2gu3A	136	68.39	d.17.1.6,d.17.1.6	147178,147179
2ogtA	498	71.97		
1tkeA	224	72.14	d.15.10.1,d.67.1.1	112470,112471
1vqoR	155	73.46	d.55.1.1	120379
2jheA	190	73.60		
2g2kA	170	73.95		
2a15A	139	76.56	d.17.4.3	125973
2uubE	162	77.78	d.14.1.1,d.50.1.2	139936,139937
3dgeA	258	78.29		
1z3eA	132	79.79	c.47.1.12	124400
1acfA	125	80.78	d.110.1.1	40882
2nwfA	141	81.19		
2vdxA	373	83.51		
3gwrA	144	84.01		
1iscA	192	84.17	a.2.11.1,d.44.1.1	15733,38726
3b8dA	363	84.61	c.1.10.1	154951
1x9nA	688	85.20	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
1kugA	203	85.55	d.92.1.9	73008
2ieeA	271	85.71		
1uerA	191	86.69	a.2.11.1,d.44.1.1	107790,107791