# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	1.31e-16		
1wcuA	153	4.736		
1tuhA	156	6.837	d.17.4.11	107345
1iwdA	215	6.862	d.3.1.1	83756
2cxcA	144	10.11		
1shyB	551	11.64	b.69.12.1,g.16.2.1	105565,105566
2cfmA	561	14.26		
3m05A	114	17.21		
3d9rA	135	19.13	d.17.4.27	157459
3d5pA	144	20.39		
2r2zA	93	21.25	d.145.1.4	151544
1dmmA	131	22.02	d.17.4.3	38114
1xt8A	292	24.21	c.94.1.1	122293
2ia4A	287	24.75		
1i4aA	318	25.10	a.65.1.1	61681
2wvbA	148	25.16		
2dwcA	433	26.08		
2pvuA	272	26.35		
3ebtA	132	27.39	d.17.4.9	158086
1i12A	160	29.28	d.108.1.1	61515
3gfkA	131	29.35		
3fkaA	120	30.12		
1r3eA	309	30.53	b.122.1.1,d.265.1.2	96907,96908
2vhaA	287	30.77		
3h0dA	155	31.03		
3laeA	81	34.40		
3llbA	83	34.71		
2ogtA	498	34.94		
2dg5B	190	36.91		
3mbfA	342	37.91		
2wvfA	148	39.09		
1k8wA	327	39.39	b.122.1.1,d.265.1.2	83094,90388
3dm8A	143	39.92	d.17.4.20	157804
3c8nA	356	45.22		
1u6mA	199	50.09	d.108.1.1	113069
3k7nA	397	50.67		
2g2kA	170	51.52		
1gwmA	153	52.14	b.18.1.19	83348
2awpA	198	54.42		
1nwwA	149	54.73	d.17.4.8	86306
1m6kA	251	56.71	e.3.1.1	78695
1s3cA	141	56.85		
3cz8A	319	57.68		
1tkeA	224	59.03	d.15.10.1,d.67.1.1	112470,112471
1l5pA	93	61.80	d.15.4.1	73598
1oh0A	131	61.87	d.17.4.3	87004
2o1mA	258	66.31		
3k7lA	422	68.25		
1rieA	129	69.31	b.33.1.1	24427
2ieeA	271	70.38		
2i9dA	217	71.54		
1vqoR	155	74.35	d.55.1.1	120379
2d74B	148	74.49		
2pliA	91	74.97	d.145.1.4	149630
2osoA	163	74.98	d.278.1.3	149006
2o1rA	81	76.49	d.145.1.4	148549
3fz4A	120	78.56		
3d7rA	326	80.92		
1gl6A	436	81.20	c.37.1.11	70259
2vdxA	373	85.38		
1yiiA	320	85.63		
2v95A	371	86.49		
1z3eA	132	87.75	c.47.1.12	124400
2g72A	289	88.48	c.66.1.15	134724