# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	1.83e-16		
1wcuA	153	4.555		
2cxcA	144	8.240		
1tuhA	156	8.757	d.17.4.11	107345
1iwdA	215	8.857	d.3.1.1	83756
1shyB	551	11.98	b.69.12.1,g.16.2.1	105565,105566
1i4aA	318	16.53	a.65.1.1	61681
3d9rA	135	17.43	d.17.4.27	157459
2r2zA	93	19.47	d.145.1.4	151544
1i12A	160	20.19	d.108.1.1	61515
1dmmA	131	21.52	d.17.4.3	38114
2wvbA	148	21.86		
3d5pA	144	23.73		
3m05A	114	23.87		
1xt8A	292	24.08	c.94.1.1	122293
3fkaA	120	26.51		
3h0dA	155	27.70		
3ebtA	132	28.67	d.17.4.9	158086
2ia4A	287	31.14		
3mbfA	342	31.55		
3gfkA	131	31.88		
2cfmA	561	32.08		
2pvuA	272	32.67		
2awpA	198	32.88		
3laeA	81	35.75		
3dm8A	143	36.89	d.17.4.20	157804
2dwcA	433	39.07		
2wvfA	148	40.62		
1r3eA	309	43.26	b.122.1.1,d.265.1.2	96907,96908
1k8wA	327	44.20	b.122.1.1,d.265.1.2	83094,90388
3llbA	83	45.10		
1m6kA	251	47.98	e.3.1.1	78695
2ogtA	498	49.10		
3c8nA	356	50.27		
1nwwA	149	50.49	d.17.4.8	86306
2dg5B	190	50.82		
2g2kA	170	53.12		
1s3cA	141	55.36		
2v95A	371	55.74		
1tkeA	224	56.10	d.15.10.1,d.67.1.1	112470,112471
1yiiA	320	58.51		
1gwmA	153	59.85	b.18.1.19	83348
1u6mA	199	60.75	d.108.1.1	113069
2vhaA	287	61.44		
3cz8A	319	62.05		
2o1mA	258	62.35		
3k7nA	397	62.81		
1iscA	192	63.71	a.2.11.1,d.44.1.1	15733,38726
1l5pA	93	64.63	d.15.4.1	73598
2vdxA	373	66.68		
2g72A	289	67.80	c.66.1.15	134724
2nybA	192	69.85	a.2.11.1,d.44.1.1	138804,138805
1gl6A	436	70.09	c.37.1.11	70259
2hyvA	308	70.22		
1uerA	191	73.02	a.2.11.1,d.44.1.1	107790,107791
2ieeA	271	73.12		
3bfrA	215	73.18		
1oh0A	131	74.59	d.17.4.3	87004
1dm5A	315	77.18	a.65.1.1	18186
3fz4A	120	77.51		
2onkC	284	77.76	f.58.1.1	148905
1vqoR	155	77.83	d.55.1.1	120379
2gojA	197	78.09		
2pliA	91	79.69	d.145.1.4	149630
2i9dA	217	80.36		
3b8dA	363	80.83	c.1.10.1	154951
2o1rA	81	83.38	d.145.1.4	148549
3k7lA	422	85.51		
1rieA	129	88.71	b.33.1.1	24427