# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	2.07e-13		
1tuhA	156	8.290	d.17.4.11	107345
3d9rA	135	9.060	d.17.4.27	157459
2dwcA	433	9.261		
2cxcA	144	14.81		
1dmmA	131	15.31	d.17.4.3	38114
1r3eA	309	18.39	b.122.1.1,d.265.1.2	96907,96908
1wcuA	153	20.30		
1k8wA	327	21.34	b.122.1.1,d.265.1.2	83094,90388
3ebtA	132	23.34	d.17.4.9	158086
2dg5B	190	23.62		
1nwwA	149	27.52	d.17.4.8	86306
2r2zA	93	28.04	d.145.1.4	151544
1iwdA	215	28.68	d.3.1.1	83756
2wvbA	148	30.30		
2g2kA	170	40.56		
1iznA	286	42.03	e.43.1.1	83847
1qw2A	102	44.11	d.249.1.1	96456
3d5pA	144	49.08		
3gfkA	131	49.54		
3m05A	114	51.32		
2uubE	162	52.06	d.14.1.1,d.50.1.2	139936,139937
2gu3A	136	52.14	d.17.1.6,d.17.1.6	147178,147179
1i4aA	318	55.66	a.65.1.1	61681
3llbA	83	55.68		
2cfmA	561	57.70		
3g8zA	148	58.79		
1t82A	155	59.20	d.38.1.5	106639
2g72A	289	62.96	c.66.1.15	134724
3fkaA	120	63.47		
3dm8A	143	66.48	d.17.4.20	157804
1shyB	551	67.90	b.69.12.1,g.16.2.1	105565,105566
2pliA	91	68.20	d.145.1.4	149630
2awpA	198	71.73		
3ewyA	260	76.12		
1iscA	192	76.15	a.2.11.1,d.44.1.1	15733,38726
2pvuA	272	77.40		
3kolA	156	81.74		
2wvfA	148	81.97		
3laeA	81	87.60		
1oh0A	131	88.05	d.17.4.3	87004
2v40A	459	88.55