# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3lmmA 583 1.07e-14 2gojA 197 1.820 1uerA 191 2.722 a.2.11.1,d.44.1.1 107790,107791 1tuhA 156 2.726 d.17.4.11 107345 2dwcA 433 5.537 1i4aA 318 5.639 a.65.1.1 61681 2awpA 198 5.761 2z3yA 662 8.171 a.4.1.18,c.3.1.2,d.16.1.5 154024,154025,154026 3d9rA 135 8.534 d.17.4.27 157459 1x9nA 688 9.99 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 1wcuA 153 10.11 2wklA 497 10.84 1r3eA 309 10.90 b.122.1.1,d.265.1.2 96907,96908 1k8wA 327 12.93 b.122.1.1,d.265.1.2 83094,90388 2frqA 225 15.06 d.3.1.1 133999 1shyB 551 15.35 b.69.12.1,g.16.2.1 105565,105566 2hivA 621 15.99 1wkyA 464 16.07 b.18.1.31,c.1.8.3 120992,120993 1nofA 383 16.97 b.71.1.2,c.1.8.3 92020,92021 1iwdA 215 18.22 d.3.1.1 83756 2x1dA 357 18.35 1my6A 199 19.47 a.2.11.1,d.44.1.1 85232,85233 1dmmA 131 20.88 d.17.4.3 38114 1yw1A 442 21.83 c.1.16.4 124130 2v95A 371 22.25 3delB 242 23.90 1iznA 286 27.35 e.43.1.1 83847 3d5pA 144 28.66 3m05A 114 28.84 3l2oB 312 29.63 2cxcA 144 30.62 2wvbA 148 34.75 1lnsA 763 36.50 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ne7A 289 38.04 c.124.1.1 91833 3h0dA 155 39.84 1t7vA 278 40.10 b.1.1.2,d.19.1.1 112302,112303 3h7mA 234 40.26 3fw2A 150 40.48 1iscA 192 40.60 a.2.11.1,d.44.1.1 15733,38726 1nwwA 149 41.82 d.17.4.8 86306 1u6mA 199 42.00 d.108.1.1 113069 2uubE 162 43.23 d.14.1.1,d.50.1.2 139936,139937 1e4yA 214 43.96 c.37.1.1,g.41.2.1 31901,45181 1dm5A 315 44.38 a.65.1.1 18186 1jk7A 323 46.70 d.159.1.3 63144 3gsiA 827 48.59 3cobA 369 50.19 c.37.1.9 156855 3gfkA 131 50.40 1gl6A 436 51.05 c.37.1.11 70259 3ebtA 132 51.64 d.17.4.9 158086 2r2zA 93 51.86 d.145.1.4 151544 1tu6A 215 53.92 d.3.1.1 107318 1o97C 264 56.81 c.26.2.3 81232 3dmcA 134 57.49 d.17.4.10 157805 2x1cA 357 58.77 2w7wA 194 59.13 1z3eA 132 59.99 c.47.1.12 124400 1i12A 160 61.33 d.108.1.1 61515 1eu1A 780 61.39 b.52.2.2,c.81.1.1 26903,35311 3k0zA 159 61.50 3dnuA 440 64.65 1e7uA 961 64.95 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 3bh1A 507 65.41 3cikA 689 67.31 2gu3A 136 70.35 d.17.1.6,d.17.1.6 147178,147179 2i2cA 272 71.74 3fkaA 120 72.95 1uesA 191 74.16 a.2.11.1,d.44.1.1 107798,107799 3bfrA 215 76.98 1ur4A 399 77.17 c.1.8.3 113402 1s3cA 141 78.49 1r17A 343 79.48 b.2.3.4,b.2.3.4 96796,96797 3cbjA 266 79.88 1ehiA 377 80.80 c.30.1.2,d.142.1.1 31716,41484 3llbA 83 81.11 1rieA 129 81.17 b.33.1.1 24427 2vhaA 287 82.38 1fnoA 417 83.17 d.58.19.1,c.56.5.4 70145,75841 1itwA 741 83.79 c.77.1.2 76793 2prvA 153 84.96 d.369.1.1 149817 1uhvA 500 88.54 b.71.1.2,c.1.8.3 99402,99403 2i9dA 217 88.59 3ewyA 260 88.83 1gwmA 153 89.35 b.18.1.19 83348