# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	3.97e-14		
3d9rA	135	9.915	d.17.4.27	157459
2dwcA	433	10.31		
1tuhA	156	13.73	d.17.4.11	107345
1wcuA	153	13.91		
1iwdA	215	17.04	d.3.1.1	83756
1r3eA	309	17.27	b.122.1.1,d.265.1.2	96907,96908
2cxcA	144	20.46		
2g72A	289	23.66	c.66.1.15	134724
3m05A	114	27.59		
1dmmA	131	27.90	d.17.4.3	38114
2pvuA	272	29.58		
2r2zA	93	31.31	d.145.1.4	151544
2dg5B	190	35.89		
1shyB	551	37.76	b.69.12.1,g.16.2.1	105565,105566
1i4aA	318	38.57	a.65.1.1	61681
1k8wA	327	39.10	b.122.1.1,d.265.1.2	83094,90388
3mbfA	342	42.96		
3fkaA	120	44.21		
2wvbA	148	44.90		
3d5pA	144	46.28		
1hl9A	449	47.17	b.71.1.3,c.1.8.11	90650,90651
1nwwA	149	48.08	d.17.4.8	86306
2g2kA	170	50.52		
3gfkA	131	51.20		
3bfrA	215	54.90		
2uubE	162	56.78	d.14.1.1,d.50.1.2	139936,139937
1iscA	192	56.88	a.2.11.1,d.44.1.1	15733,38726
3dm8A	143	63.19	d.17.4.20	157804
3llbA	83	63.54		
3g8zA	148	66.67		
2cfmA	561	66.96		
2awpA	198	67.98		
2i62A	265	71.18		
3cz8A	319	74.38		
1iznA	286	77.67	e.43.1.1	83847
1t82A	155	78.52	d.38.1.5	106639
3ebtA	132	79.80	d.17.4.9	158086
3h0dA	155	81.13		
2nybA	192	83.23	a.2.11.1,d.44.1.1	138804,138805
2gojA	197	84.74		
3ewyA	260	84.89		
2qapA	391	88.83	c.1.10.1	150320