# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	5.83e-18		
1iwdA	215	3.672	d.3.1.1	83756
1wcuA	153	6.110		
3d9rA	135	8.884	d.17.4.27	157459
1tuhA	156	9.402	d.17.4.11	107345
2awpA	198	10.77		
1i4aA	318	12.55	a.65.1.1	61681
2wvbA	148	12.83		
1iscA	192	13.07	a.2.11.1,d.44.1.1	15733,38726
2gojA	197	13.36		
2r2zA	93	14.40	d.145.1.4	151544
1shyB	551	14.43	b.69.12.1,g.16.2.1	105565,105566
1dmmA	131	16.56	d.17.4.3	38114
3m05A	114	16.69		
2nybA	192	17.99	a.2.11.1,d.44.1.1	138804,138805
2dwcA	433	18.36		
1i12A	160	20.80	d.108.1.1	61515
1uerA	191	23.09	a.2.11.1,d.44.1.1	107790,107791
2w7wA	194	24.14		
3bfrA	215	25.01		
3d5pA	144	28.00		
3fkaA	120	29.93		
1m6kA	251	31.80	e.3.1.1	78695
1uesA	191	32.25	a.2.11.1,d.44.1.1	107798,107799
1r3eA	309	35.97	b.122.1.1,d.265.1.2	96907,96908
3h0dA	155	36.00		
2cxcA	144	36.23		
3ceiA	213	36.27		
1k8wA	327	37.71	b.122.1.1,d.265.1.2	83094,90388
1nwwA	149	38.98	d.17.4.8	86306
1rieA	129	41.68	b.33.1.1	24427
3g8zA	148	42.49		
3c8nA	356	43.67		
3dm8A	143	44.44	d.17.4.20	157804
3cbjA	266	44.99		
2pvuA	272	45.02		
2rgqA	144	46.55	d.17.4.25	152018
2rftA	344	47.29		
1oh0A	131	47.49	d.17.4.3	87004
1l5pA	93	48.40	d.15.4.1	73598
3gfkA	131	51.09		
3ebtA	132	52.71	d.17.4.9	158086
2wvfA	148	52.93		
3k7nA	397	53.42		
1u6mA	199	57.68	d.108.1.1	113069
3ewyA	260	58.66		
2gpcA	194	63.80		
2cw2A	226	64.50		
2hyvA	308	66.29		
1dm5A	315	67.81	a.65.1.1	18186
1yiiA	320	68.26		
1w9pA	433	69.74	c.1.8.5,d.26.3.1	114412,114413
2wz1A	219	70.71		
2hivA	621	72.78		
3cz8A	319	72.86		
2j0nA	200	74.36	a.250.1.1	137899
1gwmA	153	77.32	b.18.1.19	83348
2ia4A	287	79.54		
2g72A	289	79.88	c.66.1.15	134724
1s3cA	141	81.21		
1xreA	217	81.81		
1ix9A	205	81.83	a.2.11.1,d.44.1.1	76899,76900
3jumA	185	82.45		
2a15A	139	82.47	d.17.4.3	125973
1cojA	212	83.16	a.2.11.1,d.44.1.1	15737,38734
3fo5A	258	83.94		
2jheA	190	84.44		
3dmcA	134	88.44	d.17.4.10	157805
1xuqA	212	88.78		
1w7bA	339	89.20	a.65.1.1	114317