# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	7.04e-17		
1wcuA	153	4.876		
3m05A	114	11.28		
2cxcA	144	11.46		
1r3eA	309	12.32	b.122.1.1,d.265.1.2	96907,96908
3d9rA	135	14.95	d.17.4.27	157459
1iwdA	215	15.33	d.3.1.1	83756
1i4aA	318	20.27	a.65.1.1	61681
3h0dA	155	22.27		
1k8wA	327	24.56	b.122.1.1,d.265.1.2	83094,90388
1shyB	551	26.05	b.69.12.1,g.16.2.1	105565,105566
1dmmA	131	27.87	d.17.4.3	38114
2r2zA	93	30.02	d.145.1.4	151544
2g72A	289	30.41	c.66.1.15	134724
1tuhA	156	30.54	d.17.4.11	107345
2wvbA	148	32.66		
2awpA	198	32.69		
1iscA	192	34.20	a.2.11.1,d.44.1.1	15733,38726
1i12A	160	35.39	d.108.1.1	61515
3fkaA	120	35.78		
3bfrA	215	39.39		
2gojA	197	40.03		
3gfkA	131	42.84		
2pvuA	272	43.32		
1gwmA	153	44.03	b.18.1.19	83348
3d5pA	144	44.90		
3c8nA	356	47.10		
2nybA	192	53.54	a.2.11.1,d.44.1.1	138804,138805
2cfmA	561	65.01		
2uubE	162	65.51	d.14.1.1,d.50.1.2	139936,139937
1rieA	129	66.23	b.33.1.1	24427
2g2kA	170	66.39		
1qw2A	102	68.16	d.249.1.1	96456
2uy2A	294	68.82		
1yiiA	320	69.63		
3kolA	156	70.24		
3k7nA	397	71.02		
2jheA	190	73.05		
1l5pA	93	75.02	d.15.4.1	73598
1nwwA	149	75.52	d.17.4.8	86306
1uwmA	106	76.92	d.15.4.1	119763
1hl9A	449	77.01	b.71.1.3,c.1.8.11	90650,90651
3fz4A	120	77.80		
1dm5A	315	79.62	a.65.1.1	18186
2rftA	344	79.79		
2wz1A	219	79.97		
1oh0A	131	82.58	d.17.4.3	87004
2dg5B	190	83.71		
2hyvA	308	84.71		
1uerA	191	84.79	a.2.11.1,d.44.1.1	107790,107791
3ebtA	132	85.97	d.17.4.9	158086
1z3eA	132	86.77	c.47.1.12	124400
2ktsA	117	86.79		
2dwcA	433	89.12		
3g8zA	148	89.40