# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	3.86e-17		
1wcuA	153	7.555		
2r2zA	93	10.40	d.145.1.4	151544
2cxcA	144	10.46		
1iwdA	215	10.78	d.3.1.1	83756
1dmmA	131	14.27	d.17.4.3	38114
1tuhA	156	16.13	d.17.4.11	107345
3d9rA	135	16.33	d.17.4.27	157459
3m05A	114	16.56		
1r3eA	309	18.44	b.122.1.1,d.265.1.2	96907,96908
2awpA	198	19.05		
2g72A	289	19.39	c.66.1.15	134724
1iscA	192	19.56	a.2.11.1,d.44.1.1	15733,38726
1i4aA	318	20.43	a.65.1.1	61681
2wvbA	148	20.62		
1k8wA	327	25.27	b.122.1.1,d.265.1.2	83094,90388
2gojA	197	26.05		
3fkaA	120	27.16		
3bfrA	215	27.29		
2cfmA	561	29.36		
1i12A	160	30.27	d.108.1.1	61515
2rftA	344	31.76		
3h0dA	155	32.24		
2nybA	192	32.88	a.2.11.1,d.44.1.1	138804,138805
2pvuA	272	33.57		
1tkeA	224	35.01	d.15.10.1,d.67.1.1	112470,112471
1shyB	551	39.43	b.69.12.1,g.16.2.1	105565,105566
3d5pA	144	40.62		
2wvfA	148	44.56		
2g2kA	170	46.37		
1nwwA	149	46.52	d.17.4.8	86306
3gfkA	131	50.74		
2dwcA	433	50.77		
3k7nA	397	51.03		
2w7wA	194	51.88		
2ogtA	498	52.59		
3fz4A	120	52.66		
2hivA	621	54.32		
2jheA	190	55.22		
3dm8A	143	55.32	d.17.4.20	157804
2ia4A	287	55.97		
1uerA	191	56.17	a.2.11.1,d.44.1.1	107790,107791
1qw2A	102	57.05	d.249.1.1	96456
3g8zA	148	60.37		
3ebtA	132	63.16	d.17.4.9	158086
2vhaA	287	64.66		
3cbjA	266	66.69		
1iznA	286	67.33	e.43.1.1	83847
1gwmA	153	69.01	b.18.1.19	83348
1oh0A	131	69.02	d.17.4.3	87004
1s3cA	141	70.51		
1l5pA	93	70.77	d.15.4.1	73598
3ceiA	213	72.85		
2rgqA	144	74.08	d.17.4.25	152018
1yiiA	320	74.83		
3k0zA	159	75.02		
3llbA	83	77.09		
2osoA	163	77.52	d.278.1.3	149006
2gu3A	136	78.76	d.17.1.6,d.17.1.6	147178,147179
3lmsA	309	80.41		
2cw2A	226	80.69		
3c8nA	356	82.04		
1rieA	129	82.54	b.33.1.1	24427
3blzA	128	87.27	d.17.4.14	155403
2uy2A	294	88.23		
2dg5B	190	88.81