# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	5.91e-15		
2uy2A	294	6.973		
3h0dA	155	8.862		
1shyB	551	11.49	b.69.12.1,g.16.2.1	105565,105566
1wcuA	153	13.84		
1nwwA	149	35.72	d.17.4.8	86306
3jxsA	174	44.24		
1t82A	155	49.29	d.38.1.5	106639
1w9pA	433	52.95	c.1.8.5,d.26.3.1	114412,114413
3blzA	128	53.20	d.17.4.14	155403
2dskA	311	57.79		
2cfmA	561	60.21		
2hivA	621	61.22		
3bmbA	136	70.90		
2fp3A	316	73.45		
3b8dA	363	73.94	c.1.10.1	154951
3ebtA	132	74.42	d.17.4.9	158086
3hduA	157	79.61		
1r3eA	309	81.38	b.122.1.1,d.265.1.2	96907,96908
2hvmA	273	84.94	c.1.8.5	28985
2o3oA	254	86.78