# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	2.09e-16		
1wcuA	153	0.9791		
2hivA	621	1.433		
2vdrA	452	3.040		
2cfmA	561	6.613		
1x9nA	688	8.478	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
1gwmA	153	9.681	b.18.1.19	83348
1nwwA	149	10.51	d.17.4.8	86306
1tuhA	156	11.97	d.17.4.11	107345
1y4wA	518	13.58	b.29.1.19,b.67.2.3	116470,116471
1jv2A	957	17.68	b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1	67334,67335,67336,67337
3kf3A	509	19.47		
3g8zA	148	23.64		
1d8wA	426	26.49	c.1.15.2	29394
3b8dA	363	32.66	c.1.10.1	154951
2a15A	139	33.83	d.17.4.3	125973
1dmmA	131	36.13	d.17.4.3	38114
1ro2A	216	36.89	d.264.1.2	97665
2nr4A	213	37.61	b.45.1.4	148347
2p9wA	334	42.81		
2qhqA	125	44.56		
3bmbA	136	45.41		
1ro0A	216	46.01	d.264.1.2	97664
1gm5A	780	49.35	a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19	65298,65299,65300,65301
3d9rA	135	50.12	d.17.4.27	157459
2qapA	391	51.29	c.1.10.1	150320
1vkdA	338	51.31	b.67.2.4	108644
1iwdA	215	52.91	d.3.1.1	83756
2x8xX	235	56.05		
3bfrA	215	58.49		
3h0dA	155	58.67		
3ebtA	132	60.00	d.17.4.9	158086
3ewyA	260	64.52		
2g2kA	170	70.90		
2jgyA	279	74.77		
1uwmA	106	75.18	d.15.4.1	119763
3dmcA	134	81.99	d.17.4.10	157805
1g8sA	230	84.17	c.66.1.3	90507
2gu3A	136	85.96	d.17.1.6,d.17.1.6	147178,147179
3mbfA	342	88.13