# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	2.24e-06		
1knwA	425	5.209	b.49.2.3,c.1.6.1	90969,90970
3citA	160	6.598		
1g8sA	230	8.247	c.66.1.3	90507
1ojqA	212	8.410	d.166.1.1	93146
1a6zA	275	9.755	b.1.1.2,d.19.1.1	20781,38280
3l8dA	242	10.25		
2c8eE	211	12.02		
3edpA	236	13.26		
2v95A	371	13.27		
3gwrA	144	14.25		
3ebyA	163	14.52	d.17.4.4	158087
2w0mA	235	16.89		
3d9rA	135	17.37	d.17.4.27	157459
3gzaA	443	19.66		
3eeyA	197	21.09		
1oc0A	379	21.30	e.1.1.1	86790
3ecbA	277	22.78		
2gxfA	142	27.70	d.17.4.22	147191
1mtpA	323	28.05	e.1.1.1	85107
1i4fA	275	28.10	b.1.1.2,d.19.1.1	61687,61688
3hx8A	129	28.35		
1r45A	204	30.44	d.166.1.1	111683
3ff2A	117	31.01		
2gu3A	136	31.43	d.17.1.6,d.17.1.6	147178,147179
2g72A	289	31.49	c.66.1.15	134724
1t7vA	278	32.09	b.1.1.2,d.19.1.1	112302,112303
3e6hA	275	32.18		
2qugA	394	32.27		
3duwA	223	33.03		
1kjvA	284	34.04	b.1.1.2,d.19.1.1	77421,77422
2rivA	343	34.34		
1i2sA	282	35.02	e.3.1.1	71104
1bwvS	138	35.03	d.73.1.1	39662
3g8zA	148	37.94		
1xh3A	276	40.45	b.1.1.2,d.19.1.1	115287,115288
2obfA	289	40.97		
3bw8A	217	40.98		
2vdxA	373	44.14		
2k54A	123	44.29	d.17.4.29	148271
1cv8A	174	44.55	d.3.1.1	37089
1lbvA	252	45.49	e.7.1.1	73813
1dqpA	230	45.89	c.61.1.1	34069
3kkgA	146	46.35		
3gdhA	241	46.83		
2veaA	520	47.08	d.110.2.1,d.110.2.4,d.110.3.9	153022,153023,153024
3hcaA	289	47.38		
1g8aA	227	48.05	c.66.1.3	90506
3bwaA	276	48.84	b.1.1.2,d.19.1.1	155683,155684
2o3bB	136	49.97	d.221.1.1	138902
2p8tA	200	50.02	a.4.5.72,d.74.4.2	149315,149316
3fkaA	120	50.61		
2culA	232	51.60	c.3.1.7	130813
1k5nA	276	52.92	b.1.1.2,d.19.1.1	77266,77267
3hceA	289	53.39		
2h4pA	394	53.49		
3gzrA	146	53.77		
1a1nA	276	54.83	b.1.1.2,d.19.1.1	20755,38267
3f1sA	385	55.98		
1lk2A	274	56.91	b.1.1.2,d.19.1.1	91056,91057
1qlpA	394	58.98	e.1.1.1	42628
2j3xA	431	60.17		
3jwgA	219	62.32		
2r41A	110	65.56		
1giqA	413	68.19	d.166.1.1,d.166.1.1	76224,76225
3e6fA	274	69.69		
2ooiA	162	70.10	d.190.1.2	148926
3kyoA	273	70.91		
3dnuA	440	73.11		
3bs4A	260	73.44		
1o7nB	194	74.17	d.17.4.4	81164
2cw9A	194	76.44	d.17.4.13	130920
1nt2A	210	76.55	c.66.1.3	86149
3bb9A	148	76.90	d.17.4.16	155049
1y4hA	188	77.49	d.3.1.1	122615
3dxoA	121	77.66	d.17.4.19	157933
3h7qA	132	77.90		
2wvvA	450	79.81		
2ipxA	233	80.10		
1jmoA	480	80.12	e.1.1.1	77138
1tuhA	156	80.85	d.17.4.11	107345
2ex5A	207	81.53		
1zatA	250	83.15	b.160.1.1,d.335.1.1	124845,124846
1a1oA	276	85.52	b.1.1.2,d.19.1.1	20751,38265
3cbgA	232	87.16