Best Alignments for T0557

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
3lmmA	2.4140e-16	3lmmA/T0557-3lmmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dmmA	9.0062e+00	1dmmA/T0557-1dmmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.3
3ebtA	1.8071e+01	3ebtA/T0557-3ebtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.9
1oh0A	2.1661e+01	1oh0A/T0557-1oh0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.3
1wcuA	2.2754e+01	1wcuA/T0557-1wcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3k0zA	2.3548e+01	3k0zA/T0557-3k0zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3d9rA	2.3826e+01	3d9rA/T0557-3d9rA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.17.4.27
2cxcA	3.0119e+01	2cxcA/T0557-2cxcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3m05A	3.3225e+01	3m05A/T0557-3m05A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g2kA	3.6350e+01	2g2kA/T0557-2g2kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3hx8A	3.6566e+01	3hx8A/T0557-3hx8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3h0dA	3.7202e+01	3h0dA/T0557-3h0dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ecsA	4.1282e+01	1ecsA/T0557-1ecsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ia4A	4.3228e+01	2ia4A/T0557-2ia4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2amhA	4.4967e+01	2amhA/T0557-2amhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.51.4.2
3g0kA	4.6240e+01	3g0kA/T0557-3g0kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3fh1A	4.6888e+01	3fh1A/T0557-3fh1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bo1A	5.1214e+01	2bo1A/T0557-2bo1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.79.3.1
3c8nA	5.1944e+01	3c8nA/T0557-3c8nA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3fgyA	5.2185e+01	3fgyA/T0557-3fgyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001