# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	1.64e-14		
1wcuA	153	3.421		
2g2kA	170	4.546		
1dmmA	131	7.744	d.17.4.3	38114
2ia4A	287	12.65		
2cxcA	144	13.18		
1qw2A	102	17.25	d.249.1.1	96456
3d9rA	135	18.05	d.17.4.27	157459
3c8nA	356	18.73		
1oygA	447	19.33	b.67.2.2	93726
1iznA	286	21.90	e.43.1.1	83847
1oh0A	131	22.86	d.17.4.3	87004
2i62A	265	24.25		
3m05A	114	27.76		
2bo1A	101	29.39	d.79.3.1	146161
3b9fI	395	29.85		
2zxdA	455	30.70		
1hl9A	449	33.03	b.71.1.3,c.1.8.11	90650,90651
2uy2A	294	33.77		
2pvuA	272	35.64		
3ebtA	132	36.13	d.17.4.9	158086
3hx8A	129	39.83		
1lucB	324	40.27	c.1.16.1	29548
2b81A	323	40.36		
2cclA	158	40.42	b.2.2.2	130248
2amhA	207	41.13	c.51.4.2	127019
2vhaA	287	42.83		
1x9nA	688	43.22	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
2gu3A	136	45.70	d.17.1.6,d.17.1.6	147178,147179
2w83A	165	48.42		
2cfmA	561	49.55		
3lk41	286	52.49		
2v25A	259	55.43		
1rhcA	330	56.98	c.1.16.3	97468
3k0zA	159	58.38		
2x8xX	235	59.28		
2r15A	212	61.50		
3llbA	83	62.33		
1p4oA	322	62.78	d.144.1.7	87775
2bngA	149	64.34	d.17.4.8	146156
2r2zA	93	64.87	d.145.1.4	151544
1nqkA	381	67.69	c.1.16.4	92050
2b7uA	257	69.58		
1py5A	326	69.84	d.144.1.7	104389
1gwmA	153	69.85	b.18.1.19	83348
3h0dA	155	71.01		
1efpB	252	71.63	c.26.2.3	31636
3hmmA	303	75.06		
1tkeA	224	79.20	d.15.10.1,d.67.1.1	112470,112471
3lmsA	309	80.81		
1w41A	101	80.83	d.79.3.1	145812
2yvlA	248	82.54		
3fxaA	201	82.58		
2pliA	91	87.10	d.145.1.4	149630
1dtdA	303	87.38	c.56.5.1	33823
2q8gA	407	87.67